The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution

T Shi, C Huneau, Y Zhang, Y Li, J Chen, J Salse… - Nature Plants, 2022 - nature.com
… Therefore, to better track genome evolution during the … and other lineages of angiosperms,
we further assigned … We concatenated single-copy genes and generated a phylogenetic tree

Genomic insights into lineage-specific evolution of the oleosin family in Euphorbiaceae

Z Zou, Y Zhao, L Zhang - BMC genomics, 2022 - Springer
… in seeds of gymnosperms and angiosperms; the SH clade are … MUSCLE and the phylogenetic
tree was constructed using … This is consistent with a slow genome evolution in long-lived …

Ancient Duplication and Lineage-Specific Transposition Determine Evolutionary Trajectory of ERF Subfamily across Angiosperms

XG Zhu, GR Hutang, LZ Gao - International Journal of Molecular Sciences, 2024 - mdpi.com
… A phylogenetic tree was constructed using all protein sequences. Based on the classification
… lineage-specific synteny suggested that gene duplication events other than whole genome

Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution

L Zhang, X Zhu, Y Zhao, J Guo, T Zhang… - … and Evolution, 2022 - academic.oup.com
… several times in different angiosperm groups. Among them, … We identified a cluster of gene
duplications (CGD5) shared by … To unravel the evolutionary history of GD across Pooideae …

Chromosome-level genome assembly of a parent species of widely cultivated azaleas

FS Yang, S Nie, H Liu, TL Shi, XC Tian… - Nature …, 2020 - nature.com
… Furthermore, we unravel the metabolic co-expression network of … A phylogenetic tree was
constructed for the 15 species of … genome evolution across asterids, we searched for genome-…

Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification

J Bechteler, G Peñaloza‐Bojacá, D Bell… - American Journal of …, 2023 - Wiley Online Library
… We recovered a phylogenetic tree of the mosses (Figure 2; Appendices S4, S7) that is
congruent with most current ordinal relationships based on variation in sporangial dehiscence, …

Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis

Z Tian, P Zeng, X Lu, T Zhou, Y Han, Y Peng… - Plant …, 2022 - cell.com
genomes with five other sequenced genomes of angiosperm … , we identified 429 single-copy
orthologous gene families … a superalignment matrix to construct a phylogenetic tree. The …

[PDF][PDF] Exploring genome triplication as a driver of plant diversification and adaptive evolution

S Agrawal - 2023 - mathsjournal.com
… will unravel the adaptive advantages conferred by genome triplication, … Understanding how
triplicated genomes evolve over … to adaptive evolution in angiosperms. Molecular Plant. 2020;…

Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family

W Dong, E Li, Y Liu, C Xu, Y Wang, K Liu, X Cui, J Sun… - BMC biology, 2022 - Springer
… relationships, such as the root of angiosperms [1, 2], the … genome sequencing and
published complete genomes of … tree, we analyzed and distinguished the signal of gene tree

Phylogenomics and the rise of the angiosperms

AR Zuntini, T Carruthers, O Maurin, PC Bailey… - Nature, 2024 - nature.com
tree to time using 200 fossils, we discovered that early angiosperm evolution was characterized
by high gene tree … than 80% of extant angiosperm orders. Steady diversification ensued …