The slow-evolving Acorus tatarinowii genome sheds light on ancestral monocot evolution
T Shi, C Huneau, Y Zhang, Y Li, J Chen, J Salse… - Nature Plants, 2022 - nature.com
… Therefore, to better track genome evolution during the … and other lineages of angiosperms,
we further assigned … We concatenated single-copy genes and generated a phylogenetic tree …
we further assigned … We concatenated single-copy genes and generated a phylogenetic tree …
Genomic insights into lineage-specific evolution of the oleosin family in Euphorbiaceae
Z Zou, Y Zhao, L Zhang - BMC genomics, 2022 - Springer
… in seeds of gymnosperms and angiosperms; the SH clade are … MUSCLE and the phylogenetic
tree was constructed using … This is consistent with a slow genome evolution in long-lived …
tree was constructed using … This is consistent with a slow genome evolution in long-lived …
Ancient Duplication and Lineage-Specific Transposition Determine Evolutionary Trajectory of ERF Subfamily across Angiosperms
XG Zhu, GR Hutang, LZ Gao - International Journal of Molecular Sciences, 2024 - mdpi.com
… A phylogenetic tree was constructed using all protein sequences. Based on the classification
… lineage-specific synteny suggested that gene duplication events other than whole genome …
… lineage-specific synteny suggested that gene duplication events other than whole genome …
Phylotranscriptomics resolves the phylogeny of Pooideae and uncovers factors for their adaptive evolution
L Zhang, X Zhu, Y Zhao, J Guo, T Zhang… - … and Evolution, 2022 - academic.oup.com
… several times in different angiosperm groups. Among them, … We identified a cluster of gene
duplications (CGD5) shared by … To unravel the evolutionary history of GD across Pooideae …
duplications (CGD5) shared by … To unravel the evolutionary history of GD across Pooideae …
Chromosome-level genome assembly of a parent species of widely cultivated azaleas
… Furthermore, we unravel the metabolic co-expression network of … A phylogenetic tree was
constructed for the 15 species of … genome evolution across asterids, we searched for genome-…
constructed for the 15 species of … genome evolution across asterids, we searched for genome-…
Comprehensive phylogenomic time tree of bryophytes reveals deep relationships and uncovers gene incongruences in the last 500 million years of diversification
J Bechteler, G Peñaloza‐Bojacá, D Bell… - American Journal of …, 2023 - Wiley Online Library
… We recovered a phylogenetic tree of the mosses (Figure 2; Appendices S4, S7) that is
congruent with most current ordinal relationships based on variation in sporangial dehiscence, …
congruent with most current ordinal relationships based on variation in sporangial dehiscence, …
Thirteen Dipterocarpoideae genomes provide insights into their evolution and borneol biosynthesis
Z Tian, P Zeng, X Lu, T Zhou, Y Han, Y Peng… - Plant …, 2022 - cell.com
… genomes with five other sequenced genomes of angiosperm … , we identified 429 single-copy
orthologous gene families … a superalignment matrix to construct a phylogenetic tree. The …
orthologous gene families … a superalignment matrix to construct a phylogenetic tree. The …
[PDF][PDF] Exploring genome triplication as a driver of plant diversification and adaptive evolution
S Agrawal - 2023 - mathsjournal.com
… will unravel the adaptive advantages conferred by genome triplication, … Understanding how
triplicated genomes evolve over … to adaptive evolution in angiosperms. Molecular Plant. 2020;…
triplicated genomes evolve over … to adaptive evolution in angiosperms. Molecular Plant. 2020;…
Phylogenomic approaches untangle early divergences and complex diversifications of the olive plant family
… relationships, such as the root of angiosperms [1, 2], the … genome sequencing and
published complete genomes of … tree, we analyzed and distinguished the signal of gene tree …
published complete genomes of … tree, we analyzed and distinguished the signal of gene tree …
Phylogenomics and the rise of the angiosperms
… tree to time using 200 fossils, we discovered that early angiosperm evolution was characterized
by high gene tree … than 80% of extant angiosperm orders. Steady diversification ensued …
by high gene tree … than 80% of extant angiosperm orders. Steady diversification ensued …