Evidence of the reduced abundance of proline cis conformation in protein poly proline tracts

A Urbanek, M Popovic, CA Elena-Real… - Journal of the …, 2020 - ACS Publications
… Proline is unique among the 20 genetically coded amino acids. (1) The … structures known
as poly proline helices of type-I (all-cis right handed, PP-I) or type-II (all-trans left handed, PP-II), …

Effect of residue insertion on the stability of polyproline‐I and II structures: Circular dichroism spectroscopic analyses of block‐type oligo‐prolines (Pro) m‐Gly/Ala‐(Pro …

S Kakinoki, M Kitamura, Y Noguchi, Y Arichi - Peptide Science, 2020 - Wiley Online Library
unique conformational behaviors. First, it is known that oligo- and poly-(l-proline) form two
unique helices, named polyproline… charge-dipole interaction in the compact structure of PP-I. …

[HTML][HTML] Glycine in water favors the polyproline II state

B Andrews, S Zhang, R Schweitzer-Stenner, B Urbanc - Biomolecules, 2020 - mdpi.com
… non-local interactions within compact or globular conformations or … state rather than the
secondary structure of the entire or a … ensembles of glycine residues are rare. Graf et al. explored …

[PDF][PDF] Recent advances on PolyProline II

JC Gelly, AG de Brevern - academia.edu
structure of an oligoproline adopting an all-trans polyproline … This unique property is a reason
for PPII conformation to … The compactness and inherent flexibility of the PPII conformation is …

Deciphering the Backbone Noncovalent Interactions that Stabilize Polyproline II Conformation and Reduce cis Proline Abundance in Polyproline Tracts

B Sahariah, BK Sarma - The Journal of Physical Chemistry B, 2021 - ACS Publications
… such as trifluoroethanol but prefers a more compact right-handed PPI helical geometry in
less-… were unique PPII helical chains of different lengths (Figure 5A). The structural parameters …

Not Only Expansion: Proline Content and Density Also Induce Disordered Protein Conformation Compaction

MK Hazra, Y Gilron, Y Levy - Journal of Molecular Biology, 2023 - Elsevier
… associated with the unique three-dimensional structure of folded … formation of alternative
local structural elements. In particular… secondary structural elements referred to as polyproline II (…

Triglycine (GGG) Adopts a Polyproline II (pPII) Conformation in Its Hydrated Crystal Form: Revealing the Role of Water in Peptide Crystallization

M Guo, I Rosbottom, L Zhou, CW Yong… - The Journal of …, 2021 - ACS Publications
… The anhydrous triglycine structure was found to have two … similar environments in other crystal
structures. The O8 is one … conformation of triglycine is a compact conformation, rather than …

Remarkably high solvatochromism in the circular dichroism spectra of the polyproline-II conformation: limitations or new opportunities?

V Kubyshkin, J Bürck, O Babii, N Budisa… - Physical Chemistry …, 2021 - pubs.rsc.org
… An oligomeric proline forms two types of helices, compact polyproline-I and extended … of
the P II helical structure to changing media. The use of oligo-Oic provides a unique opportunity, …

The ambivalent role of proline residues in an intrinsically disordered protein: from disorder promoters to compaction facilitators

B Mateos, C Conrad-Billroth, M Schiavina… - Journal of molecular …, 2020 - Elsevier
… Nuclear magnetic resonance (NMR) is a unique tool to characterize the structure and
dynamics of proteins at atomic resolution. Most methods used in the study of biomolecules rely on …

Preparation and conformational analysis of polyproline tri-helix macrocycle nanoscaffolds of varied sizes

CL Tsai, SY Wu, HK Hsu, SB Huang, CH Lin, YT Chan… - Nanoscale, 2021 - pubs.rsc.org
… , polyproline peptide has a unique left-handed helix structure known as polyproline type II
helix … The transformation from PPII to the more compact PPI helix completely changes the helix …