Network structure of the mouse brain connectome with voxel resolution

L Coletta, M Pagani, JD Whitesell, JA Harris… - Science …, 2020 - science.org
… This resource entails an improved interpolation model for single tracer injection maps
and provides whole-brain coverage, encompassing subcortical districts not covered by state-of-the-…

[HTML][HTML] A Scalable Staining Strategy for Whole-Brain Connectomics

X Lu, Y Wu, RL Schalek, Y Meirovitch, DR Berger… - bioRxiv, 2023 - ncbi.nlm.nih.gov
… of increasingly larger connectomic projects, especially the whole mouse brain project, we
developed ODeCO, a procedure that is able to stain and embed whole mouse brains for EM …

FlyWire: online community for whole-brain connectomics

S Dorkenwald, CE McKellar, T Macrina, N Kemnitz… - Nature …, 2022 - nature.com
… of neurons across the whole brain. It is likely that each whole-brain connectome will require
… We propose that whole-brain connectomics for each animal species could benefit from a …

Merged magnetic resonance and light sheet microscopy of the whole mouse brain

GA Johnson, Y Tian, DG Ashbrook… - Proceedings of the …, 2023 - National Acad Sciences
… Throughput is sufficiently high that HiDiver is being used in quantitative studies of the
impact of gene variants and aging on mouse brain cytoarchitecture and connectomics. …

Comparative prospects of imaging methods for whole-brain mammalian connectomics

LT Collins, R Koene - arXiv preprint arXiv:2405.10488, 2024 - arxiv.org
whole-brain mammalian connectomics, especially in the context of expanded samples.(Small
FOV vastly slows imaging due to volumetric scaling). In another highly publicized advance…

[HTML][HTML] Variability and heritability of mouse brain structure: Microscopic MRI atlases and connectomes for diverse strains

N Wang, RJ Anderson, DG Ashbrook… - Neuroimage, 2020 - Elsevier
whole brain structural MRI and diffusion connectomes for four diverse isogenic lines of mice
(… Routine rodent brain connectomics is challenging because of the simultaneous demands of …

Macroscopic structural and connectome mapping of the mouse brain using diffusion magnetic resonance imaging

TM Arefin, CH Lee, JD White, J Zhang, A Kaffman - Bio-protocol, 2021 - bio-protocol.org
… entire mouse brain at an isotropic resolution of 100 µm. We first used unbiased whole-brain
voxel-… in the brain of adult mice exposed to unpredictable postnatal stress (UPS), which is a …

[HTML][HTML] Resolution and b value dependent structural connectome in ex vivo mouse brain

S Crater, S Maharjan, Y Qi, Q Zhao, G Cofer, JC Cook… - Neuroimage, 2022 - Elsevier
… Total Voxels are the voxels of the whole mouse brain. The propagation process was repeated
… with whole brain seeding and the mean tract length of the whole brain tractography was …

A whole-brain monosynaptic input connectome to neuron classes in mouse visual cortex

S Yao, Q Wang, KE Hirokawa, B Ouellette… - Nature …, 2023 - nature.com
… Although brain-wide connectomics at single-cell resolution is currently beyond our grasp
for complex nervous systems with over millions of neurons, different strategies have been …

Cell type-specific connectome predicts distributed working memory activity in the mouse brain

X Ding, S Froudist-Walsh, J Jaramillo, J Jiang… - elife, 2024 - elifesciences.org
whole- brain mechanisms of cognition and behavior. We developed a large- scale model of
the multiregional mouse brain … is because currently available connectomic data used in this …