Genome‐scale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets

H Hu, P Sun, Y Yang, J Ma, J Liu - Journal of Integrative Plant …, 2023 - Wiley Online Library
… on sequence variations of three genes, rbcL, 18S, and atpB … -scale angiosperm phylogenies
(GAPs) based on sequence … the phylogenetic relationships among the major lineages of …

[PDF][PDF] ANGIOSPERM PHYLOGENY GROUP (APG) SİSTEMİ

HA AKPULAT - Fen Bilimleri & Matematikte Araştırma ve … - gecekitapligi.com
… An update of the Angiosperm Phylogeny Group classification for the orders and families of
… -tation in angiosperms and ferns: recommendations to the Angiosperm Phylogeny Group for …

Plastid phylogenomic insights into relationships of all flowering plant families

HT Li, Y Luo, L Gan, PF Ma, LM Gao, JB Yang, J Cai… - BMC biology, 2021 - Springer
… of angiosperms, reflected in the widely accepted classification of the Angiosperm Phylogeny
… Using our 86 newly sequenced plastomes representing 57 angiosperm families along with …

Genetic variability and phylogenetic relationships of Begonia multangula based on atpB-rbcL non-coding spacer of cpDNA sequences

T Warseno, M Efendi, AR Chasani… - Biodiversitas Journal of …, 2022 - smujo.id
… separates the plastid genes atpB and rbcL, was one of the first noncoding markers used for
phylogeny inference. It has been recently used in Angiosperms phylogenetic studies such as …

Phylogenetics and comparative plastome genomics of two of the largest genera of angiosperms, Piper and Peperomia (Piperaceae)

SE Simmonds, JF Smith, C Davidson… - Molecular Phylogenetics …, 2021 - Elsevier
… To complement our taxon sampling, we downloaded raw sequences from the Sequence
Read … newly assembled and annotated Piper and Peperomia species from Sequence Read …

Plastome phylogenomic study of Gentianeae (Gentianaceae): widespread gene tree discordance and its association with evolutionary rate heterogeneity of plastid …

X Zhang, Y Sun, JB Landis, Z Lv, J Shen, H Zhang… - BMC Plant …, 2020 - Springer
… We sequenced and annotated 10 plastome sequences of … (atpB) of the three widely used
plastid markers (rbcL, atpB … the phylogenetic reconstruction of the angiosperm phylogeny [14]. …

Phylogeny and topological incongruence in the Rubioideae (Rubiaceae)

O Thureborn - 2023 - diva-portal.org
… Here, sequence data were obtained using both traditional and recently developed molecular
methods, substantially expanding the amount of sequence data available for phylogenetic

Whole-genome microsynteny-based phylogeny of angiosperms

T Zhao, A Zwaenepoel, JY Xue, SM Kao, Z Li… - Nature …, 2021 - nature.com
… also reconstructed phylogenies using widely adopted sequenceAngiosperm Phylogeny
Group (APG) phylogeny (version IV) 48 , and the 1000 plant transcriptomes (1KP) phylogeny of …

Integrating fossil flowers into the angiosperm phylogeny using molecular and morphological evidence

AM López-Martínez, J Schönenberger… - Systematic …, 2023 - academic.oup.com
… to investigate the phylogenetic placement of … angiosperm families. We explored multiple
analytical approaches to integrate the fossils into the phylogeny, including different phylogenetic

[PDF][PDF] A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life

RS Cook, S Dodsworth, N Epitawalage, E Françoso… - 2021 - scholar.archive.org
… The sequencing of a … angiosperm phylogenetics in the genomic era. Much like a “next 619
generation” rbcL, which underpinned so many Sanger sequencing-based plant phylogenetic