Methods for analysis of specific DNA methylation status

MJ Pajares, C Palanca-Ballester, R Urtasun… - Methods, 2021 - Elsevier
methylation evaluation with single-base resolution. Despite the advantages of these
approaches, DNA methylation differences … DNA must be fully denatured (single stranded) to ease …

Current advances in DNA methylation analysis methods

E Khodadadi, L Fahmideh, E Khodadadi… - BioMed Research …, 2021 - Wiley Online Library
… The differences between these features form the basis of the DNA methylation analysis (…
In 1999, Aggerhoim developed a methylation-specific denaturing gradient gel electrophoresis (…

DNA methylation analysis

N Hattori, YY Liu, T Ushijima - Inflammation and Cancer: Methods and …, 2023 - Springer
… Resultantly, a difference in DNA methylation status can be detected as a difference in
DNA … Excessive PCR cycles cause denaturation of the PCR product in the absence of Taq …

DNA methylation methods: Global DNA methylation and methylomic analyses

S Li, TO Tollefsbol - Methods, 2021 - Elsevier
… the measurement of cytosine methylation from specific loci at … In this review, we discuss the
different DNA methylation analysis … platforms for genome-wide analysis of DNA methylation. …

Quantitative analysis of DNA methylation by bisulfite sequencing

VV Ashapkin, LI Kutueva, BF Vanyushin - Clinical and Preclinical Models …, 2020 - Springer
… The most critical step in bisulfite analysis of DNA methylation … ensuring efficient DNA
denaturation and subsequent sulfonation … the maximal Tm difference between the “methylated” …

[HTML][HTML] Combined effects of methylated cytosine and molecular crowding on the thermodynamic stability of DNA duplexes

M Tsuruta, Y Sugitani, N Sugimoto… - International Journal of …, 2021 - mdpi.com
methylated cytosine on the thermodynamics of DNA duplexes under molecular crowding
conditions, which is a critical difference … 0 to 93 C to trace the thermal denaturation curves. The …

[HTML][HTML] The common bisulfite-conversion-based techniques to analyze DNA methylation in human cancers

F Jeddi, E Faghfuri, S Mehranfar, N Soozangar - Cancer Cell International, 2024 - Springer
… The amplified segments are subsequently denatured and run on a nondenaturing
polyacrylamide gel. Strands that differ by as little as a single base substitution can form different …

Temperature-independent genome-wide DNA methylation profile in turbot post-embryonic development

P Suárez-Bregua, A Pérez-Figueroa… - Journal of Thermal …, 2020 - Elsevier
… ) with the following cycling conditions: initial denaturation at 95 C for 10 min followed by
40 … analyses (PCoA) were performed. Furthermore, locus-specific methylation differences

[HTML][HTML] DNA Methylation and Demethylation Are Regulated by Functional DNA Methyltransferases and DnTET Enzymes in Diuraphis noxia

PH Du Preez, K Breeds, NFV Burger… - Frontiers in …, 2020 - frontiersin.org
… perform the real-time PCR analysis. Each reaction started with a denaturation step at 95C for
… To shed light on the observed difference in global demethylation but not methylation levels, …

[HTML][HTML] DNA methylation in solid tumors: functions and methods of detection

A Martisova, J Holcakova, N Izadi, R Sebuyoya… - International Journal of …, 2021 - mdpi.com
… The choice of cloning approach can make a huge difference in the whole process. Since a
single … Antibodies are better for denatured ssDNA with a low density of CpGs while MBDs bind …