[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements
… Here we describe the establishment and provision of a zebrafish developmental genomics
resource as a track hub and downloadable resource within a data coordination center, which …
resource as a track hub and downloadable resource within a data coordination center, which …
Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression
… half of its genome consists of diverse TEs. However, zebrafish TEs remain poorly characterized.
Here we describe the demography and genomic distribution of zebrafish TEs and their …
Here we describe the demography and genomic distribution of zebrafish TEs and their …
[HTML][HTML] Functions of the thyroid-stimulating hormone on key developmental features revealed in a series of zebrafish dyshormonogenesis models
J Song, Y Lu, X Cheng, C Shi, Q Lou, X Jin, J He… - Cells, 2021 - mdpi.com
… Intriguingly, mutations in the zebrafish slc16a2 gene cause neurological and behavioral …
-embryonic developmental progression, we thoroughly assessed the morphological features …
-embryonic developmental progression, we thoroughly assessed the morphological features …
Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos
… that silence yet poise developmental genes for subsequent … establishing developmental
gene poising in preZGA zebrafish … upregulation of certain developmental genes during ZGA. …
gene poising in preZGA zebrafish … upregulation of certain developmental genes during ZGA. …
The zebrafish issue: 25 years on
… genomic, … to be a developmental biologist that uses zebrafish in their research. New fluorescent
proteins, faster reporters of cellular processes, more precise lineage tracers and genome …
proteins, faster reporters of cellular processes, more precise lineage tracers and genome …
[PDF][PDF] Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis
… To accurately map the cell-type determination and developmental trajectory reconstruction,
we have constructed the spatiotemporal developmental trajectories of the zebrafish embryo …
we have constructed the spatiotemporal developmental trajectories of the zebrafish embryo …
Zebrafish information network, the knowledgebase for Danio rerio research
YM Bradford, CE Van Slyke, L Ruzicka, A Singer… - Genetics, 2022 - academic.oup.com
… The expression, phenotype, and gene ontology (GO) sections of the gene page utilize a
ribbon diagram to visually summarize which anatomical systems, developmental stages, or GO …
ribbon diagram to visually summarize which anatomical systems, developmental stages, or GO …
[HTML][HTML] CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression
M Franke, E De la Calle-Mustienes, A Neto… - Nature …, 2021 - nature.com
… gene expression patterns and disruption of developmental programs. Our results demonstrate
that CTCF is essential to regulate gene … –promoter interactions within developmental RLs. …
that CTCF is essential to regulate gene … –promoter interactions within developmental RLs. …
[PDF][PDF] Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos
AC McGarvey, W Kopp, D Vučićević, K Mattonet… - Cell Genomics, 2022 - cell.com
… This resource constitutes a solid foundation for future studies in developmental cell biology,
systems regulatory genomics, and computational data science, with an immediate direct …
systems regulatory genomics, and computational data science, with an immediate direct …
Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9
… (Danio rerio) has been extensively used as a vertebrate model organism in developmental
biology and genetic studies, partly due to the transparency of the early embryos and …
biology and genetic studies, partly due to the transparency of the early embryos and …
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