[HTML][HTML] Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

D Baranasic, M Hörtenhuber, PJ Balwierz, T Zehnder… - Nature …, 2022 - nature.com
… Here we describe the establishment and provision of a zebrafish developmental genomics
resource as a track hub and downloadable resource within a data coordination center, which …

Zebrafish transposable elements show extensive diversification in age, genomic distribution, and developmental expression

NC Chang, Q Rovira, J Wells, C Feschotte… - Genome …, 2022 - genome.cshlp.org
… half of its genome consists of diverse TEs. However, zebrafish TEs remain poorly characterized.
Here we describe the demography and genomic distribution of zebrafish TEs and their …

[HTML][HTML] Functions of the thyroid-stimulating hormone on key developmental features revealed in a series of zebrafish dyshormonogenesis models

J Song, Y Lu, X Cheng, C Shi, Q Lou, X Jin, J He… - Cells, 2021 - mdpi.com
… Intriguingly, mutations in the zebrafish slc16a2 gene cause neurological and behavioral …
-embryonic developmental progression, we thoroughly assessed the morphological features

Establishment of developmental gene silencing by ordered polycomb complex recruitment in early zebrafish embryos

GJM Hickey, CL Wike, X Nie, Y Guo, M Tan, PJ Murphy… - Elife, 2022 - elifesciences.org
… that silence yet poise developmental genes for subsequent … establishing developmental
gene poising in preZGA zebrafish … upregulation of certain developmental genes during ZGA. …

The zebrafish issue: 25 years on

MC Mullins, JN Acedo, R Priya… - …, 2021 - journals.biologists.com
genomic, … to be a developmental biologist that uses zebrafish in their research. New fluorescent
proteins, faster reporters of cellular processes, more precise lineage tracers and genome

[PDF][PDF] Spatiotemporal mapping of gene expression landscapes and developmental trajectories during zebrafish embryogenesis

C Liu, R Li, Y Li, X Lin, K Zhao, Q Liu, S Wang… - Developmental Cell, 2022 - cell.com
… To accurately map the cell-type determination and developmental trajectory reconstruction,
we have constructed the spatiotemporal developmental trajectories of the zebrafish embryo …

Zebrafish information network, the knowledgebase for Danio rerio research

YM Bradford, CE Van Slyke, L Ruzicka, A Singer… - Genetics, 2022 - academic.oup.com
… The expression, phenotype, and gene ontology (GO) sections of the gene page utilize a
ribbon diagram to visually summarize which anatomical systems, developmental stages, or GO …

[HTML][HTML] CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression

M Franke, E De la Calle-Mustienes, A Neto… - Nature …, 2021 - nature.com
gene expression patterns and disruption of developmental programs. Our results demonstrate
that CTCF is essential to regulate gene … –promoter interactions within developmental RLs. …

[PDF][PDF] Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos

AC McGarvey, W Kopp, D Vučićević, K Mattonet… - Cell Genomics, 2022 - cell.com
… This resource constitutes a solid foundation for future studies in developmental cell biology,
systems regulatory genomics, and computational data science, with an immediate direct …

Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9

Y Sun, B Zhang, L Luo, DL Shi, H Wang, Z Cui… - Genome …, 2020 - genome.cshlp.org
… (Danio rerio) has been extensively used as a vertebrate model organism in developmental
biology and genetic studies, partly due to the transparency of the early embryos and …