Behavior-related gene regulatory networks: A new level of organization in the brain
… behavioral and developmental gene regulation comes from evolutionary analysis. The rich
literature on evolutionary developmental biology (“evo-devo”) (16, 37) has revealed genetic “…
literature on evolutionary developmental biology (“evo-devo”) (16, 37) has revealed genetic “…
Gene regulatory network inference resources: A practical overview
D Mercatelli, L Scalambra, L Triboli, F Ray… - … (BBA)-Gene Regulatory …, 2020 - Elsevier
… In recent years, the concept of Gene Regulatory Networks (GRNs) has grown popular as
an effective applied biology approach for describing the complex and highly dynamic set of …
an effective applied biology approach for describing the complex and highly dynamic set of …
Gene regulatory networks controlling vertebrate retinal regeneration
… (83.8%), there was a negative correlation between development and NMDA treatment,
with decreasing developmental genes, such as ascl1a, increasing in expression in …
with decreasing developmental genes, such as ascl1a, increasing in expression in …
Gene regulatory network inference in the era of single-cell multi-omics
P Badia-i-Mompel, L Wessels, S Müller-Dott… - Nature Reviews …, 2023 - nature.com
… The interplay between chromatin, transcription factors and genes generates complex
regulatory circuits that can be represented as gene regulatory networks (GRNs). The study of …
regulatory circuits that can be represented as gene regulatory networks (GRNs). The study of …
Gene regulatory programmes of tissue regeneration
JA Goldman, KD Poss - Nature Reviews Genetics, 2020 - nature.com
… gene expression programmes. A deeper mechanistic understanding of the gene regulatory
networks of … developmental contexts, such as regulation of the INK4a/ARF tumour-suppressor …
networks of … developmental contexts, such as regulation of the INK4a/ARF tumour-suppressor …
[HTML][HTML] Gene regulatory network analysis and engineering directs development and vascularization of multilineage human liver organoids
… Here, we demonstrate that integrated analysis and engineering of gene regulatory networks
(GRNs) in PSC-derived multilineage human liver organoids direct maturation and vascular …
(GRNs) in PSC-derived multilineage human liver organoids direct maturation and vascular …
Inferring causal gene regulatory networks from coupled single-cell expression dynamics using scribe
… Single-cell RNA sequencing (scRNA-seq) experiments are attractive for gene regulatory
network inference for two reasons. First, scRNA-seq experiments now routinely produce …
network inference for two reasons. First, scRNA-seq experiments now routinely produce …
Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data
… A central question that arises now is whether we can discover the gene regulatory networks
(… that explore gene regulatory interactions underlying various developmental and tissue …
(… that explore gene regulatory interactions underlying various developmental and tissue …
SERGIO: a single-cell expression simulator guided by gene regulatory networks
P Dibaeinia, S Sinha - Cell systems, 2020 - cell.com
… Here, we present SERGIO, a simulator of single-cell gene expression data that … regulation
of genes by multiple transcription factors according to a user-provided gene regulatory network…
of genes by multiple transcription factors according to a user-provided gene regulatory network…
The evolution, evolvability and engineering of gene regulatory DNA
… gene regulatory networks often appear to be highly interconnected 26,27 , the sources of
this regulatory … are created for other species, environments and regulatory regions, our …
this regulatory … are created for other species, environments and regulatory regions, our …
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