The pattern of DNA methylation alteration, and its association with the expression changes of non-coding RNAs and mRNAs in Moso bamboo under abiotic stress
Y Ding, LH Zou, J Wu, M Ramakrishnan, Y Gao, L Zhao… - Plant Science, 2022 - Elsevier
… explored, particularly in the area of plant hormone signaling. … stress-induced DNA methylation
alteration and non-coding RNAs … ) was used to generate DNA methylome profiles of Moso …
alteration and non-coding RNAs … ) was used to generate DNA methylome profiles of Moso …
DNA and coding/non‐coding RNA methylation analysis provide insights into tomato fruit ripening
S Guo, Y Zheng, D Meng, X Zhao, Z Sang… - The Plant …, 2022 - Wiley Online Library
… Targets of long non-coding RNAs and circular RNAs with different m5C sites were also …
ethylene emission is affected by DNA methylation (5mC), we examined the changes in DNA …
ethylene emission is affected by DNA methylation (5mC), we examined the changes in DNA …
When junk DNA turns functional: transposon-derived non-coding RNAs in plants
FD Ariel, PA Manavella - Journal of experimental botany, 2021 - academic.oup.com
… maintains DNA methylation by the production of RNAPIV-/RDR2-/DCL3-dependent 24 nt
het-siRNAs. Het-siRNA can be loaded into AGO4, AGO6, or AGO3 to trigger DNA methylation …
het-siRNAs. Het-siRNA can be loaded into AGO4, AGO6, or AGO3 to trigger DNA methylation …
Functions of long non-coding RNA in Arabidopsis thaliana
P Jampala, A Garhewal, M Lodha - Plant Signaling & Behavior, 2021 - Taylor & Francis
… RNA dependent DNA methylation pathway Arabidopsis genome sequencing revealed
two plant-specific DNA dependent RNA … loci by RNA dependent DNA methylation (RdDM) …
two plant-specific DNA dependent RNA … loci by RNA dependent DNA methylation (RdDM) …
Relationships between genome methylation, levels of non‐coding RNAs, mRNAs and metabolites in ripening tomato fruit
J Zuo, D Grierson, LT Courtney, Y Wang… - The Plant …, 2020 - Wiley Online Library
… non-coding RNAs and DNA methylation could influence mRNA concentrations related to
ethylene responses, carotenoid synthesis and other ripening events during the transformation …
ethylene responses, carotenoid synthesis and other ripening events during the transformation …
Long non-coding RNA in plants in the era of reference sequences
… players driving RNA-mediated DNA methylation (RdDM). … , plant lncRNAs with known
functions are classified as long intergenic non-coding RNAs (lincRNAs), intronic non-coding RNAs …
functions are classified as long intergenic non-coding RNAs (lincRNAs), intronic non-coding RNAs …
Research progress on plant long non-coding RNA
L Wu, S Liu, H Qi, H Cai, M Xu - Plants, 2020 - mdpi.com
… In addition, the transcription, splicing patterns, and secondary structure of lncRNAs are also
regulated by RNA modification, DNA methylation, and histone modification [8,9]. For miRNAs…
regulated by RNA modification, DNA methylation, and histone modification [8,9]. For miRNAs…
Long non-coding RNAs of plants in response to abiotic stresses and their regulating roles in promoting environmental adaption
H Yang, Y Cui, Y Feng, Y Hu, L Liu, L Duan - Cells, 2023 - mdpi.com
… polymerases (Pol IV and Pol V) have been observed to transcribe their diverse lncRNA
products, involving RNA-directed DNA methylation and regulating transposable elements in …
products, involving RNA-directed DNA methylation and regulating transposable elements in …
Non-coding RNA polymerases that silence transposable elements and reprogram gene expression in plants
… non-coding RNAs. Pol IV and Pol V are the central players of RNA-directed DNA methylation
(RdDM), an RNA … ancestral Pol II to sustain non-coding RNA biogenesis in silent chromatin. …
(RdDM), an RNA … ancestral Pol II to sustain non-coding RNA biogenesis in silent chromatin. …
Non-coding RNAs as emerging targets for crop improvement
… for DNA methylation, via the RNA-directed DNA methylation (RdDM) pathway also known as,
a plant de novo DNA methylation … In spite of an increasing number of studies in plants, our …
a plant de novo DNA methylation … In spite of an increasing number of studies in plants, our …