Characterization and mitigation of gene expression burden in mammalian cells

T Frei, F Cella, F Tedeschi, J Gutiérrez, GB Stan… - Nature …, 2020 - nature.com
… of genetic networks in mammalian cells is still painstakingly slow and fraught with
inexplicable failures. Here, we demonstrate that transiently expressed genes in mammalian cells

A human cell atlas of fetal gene expression

J Cao, DR O'day, HA Pliner, PD Kingsley, M Deng… - Science, 2020 - science.org
cell atlases of gene expression and chromatin accessibility in fetal tissues. For gene expression,
cells. We leveraged the literature and other atlases to identify and annotate hundreds of …

Control of mammalian gene expression by modulation of polyA signal cleavage at 5′ UTR

L Luo, JDY Jea, Y Wang, PW Chao, L Yen - Nature biotechnology, 2024 - nature.com
gene expression in mammalian cells is crucial for safe and efficacious gene therapies and for
elucidating gene … switch that controls mammalian gene expression through modulation of a …

[HTML][HTML] FAMSi: a synthetic biology approach to the fast assembly of multiplex siRNAs for silencing gene expression in mammalian cells

F He, N Ni, Z Zeng, D Wu, Y Feng, AJ Li, B Luu… - … Therapy-Nucleic Acids, 2020 - cell.com
RNA interference (RNAi) is mediated by an ∼21-nt double-stranded small interfering RNA (siRNA)
and shows great promise in delineating gene functions and in developing …

mRNAs, proteins and the emerging principles of gene expression control

C Buccitelli, M Selbach - Nature Reviews Genetics, 2020 - nature.com
… Beginning with two alleles (two to four gene copies, depending on the cell cycle stage), a
typical gene will populate a mammalian cell with one to a few thousand transcripts. Several …

Mammalian cell culture for production of recombinant proteins: A review of the critical steps in their biomanufacturing

R O'Flaherty, A Bergin, E Flampouri, LM Mota… - Biotechnology …, 2020 - Elsevier
expression systems affects the expression vector to be used. During transient gene expression
… into the genome of the cell and as result the transfected genes only express in a limited …

A biologically stable DNAzyme that efficiently silences gene expression in cells

Y Wang, K Nguyen, RC Spitale, JC Chaput - Nature Chemistry, 2021 - nature.com
… Here we report a re-engineered version of the classic 10–23 DNAzyme that mediates persistent
gene-silencing activity in cultured mammalian cells and simultaneously resists nuclease …

Analytical distributions for detailed models of stochastic gene expression in eukaryotic cells

Z Cao, R Grima - Proceedings of the National Academy of …, 2020 - National Acad Sciences
… (A) Using parameters typical of mammalian cells, we find that our theory agrees well with
simulations for d / d p = 30 , is acceptable for d / d p = 10 , and performs poorly for d / d p = 5 ; …

Roles of mRNA poly (A) tails in regulation of eukaryotic gene expression

LA Passmore, J Coller - Nature Reviews Molecular Cell Biology, 2022 - nature.com
… In agreement with this model, depletion of CCR4–NOT components in mammalian cells
results in an overall increase in mRNA half-lives but depletion of PAN2–PAN3 does not have a …

Deciphering cellcell interactions and communication from gene expression

E Armingol, A Officer, O Harismendy… - Nature Reviews …, 2021 - nature.com
… signalling from gene expression measurements of bulk and single-cell data … expression of
their cognate genes. In this Review, we highlight discoveries enabled by analyses of cellcell