Crystal structure of CYP3A4 complexed with fluorol identifies the substrate access channel as a high-affinity ligand binding site

IF Sevrioukova - International Journal of Molecular Sciences, 2022 - mdpi.com
… To date, only a handful of crystal structures of CYP3A4 … In this study, we determined the
crystal structure of CYP3A4 bound to fluorol … The high- and low-affinity fluorol docking sites were …

Pillar[n]MaxQ: A New High Affinity Host Family for Sequestration in Water

W Xue, PY Zavalij, L Isaacs - … Chemie International Edition, 2020 - Wiley Online Library
… We report the synthesis, X-ray crystal structure, and molecular recognition properties of
pillar[n]arene derivative P[6]AS, which we refer to as Pillar[6]MaxQ along with analogues P[5]AS …

Structural determinants of affinity and selectivity in the binding of inhibitors to histone deacetylase 6

JD Osko, DW Christianson - Bioorganic & medicinal chemistry letters, 2020 - Elsevier
… the crystal structures of human and zebrafish HDAC6 catalytic domains were first reported,3,
4 more than 50 X-ray crystal structures … to the high affinity of hydroxamate-bearing inhibitors. …

Improved protein–ligand binding affinity prediction with structure-based deep fusion inference

D Jones, H Kim, X Zhang, A Zemla… - Journal of chemical …, 2021 - ACS Publications
… We use temporal and structure-based splits to assess … in cases that assume that the crystal
structure is not available. In these … We evaluate our approach on the crystal structure and …

Crystal structure of the 2019-nCoV spike receptor-binding domain bound with the ACE2 receptor

J Lan, J Ge, J Yu, S Shan, H Zhou, S Fan, Q Zhang… - BioRxiv, 2020 - biorxiv.org
… To better understand the initial step of infection at atomic-level, we determined the crystal
structure of the 2019-nCoV spike receptor-binding domain (RBD) bound with the cell receptor …

Structural insights into the rational design of a nanobody that binds with high affinity to the SARS-CoV-2 spike variant

K Yamaguchi, I Anzai, R Maeda… - The Journal of …, 2023 - academic.oup.com
… Here, we report the X-ray crystal structure of the complex of monomerized P17 bound to
the SARS-CoV-2 receptor binding domain (RBD) and investigated the binding activity of P17 …

Structural basis of human ACE2 higher binding affinity to currently circulating Omicron SARS-CoV-2 sub-variants BA. 2 and BA. 1.1

L Li, H Liao, Y Meng, W Li, P Han, K Liu, Q Wang, D Li… - Cell, 2022 - cell.com
structures of hACE2 with RBDs of BA.1.1, BA.2, and BA.3 reveal that the higher hACE2 binding
affinity … and contributes to the higher hACE2 affinity of the BA.1.1 RBD than the BA.1 RBD. …

Designing of improved drugs for COVID-19: Crystal structure of SARS-CoV-2 main protease Mpro

HM Mengist, X Fan, T Jin - Signal transduction and targeted therapy, 2020 - nature.com
… linkage with high affinity to the target 3 . Hilgenfeld’s group reported earlier that a structure-…
and enteroviruses as demonstrated by crystal structure of inhibitor-protease complex 4 . The …

Discovery of high-affinity inhibitors of the BPTF bromodomain

T Lu, H Lu, Z Duan, J Wang, J Han, S Xiao… - Journal of Medicinal …, 2021 - ACS Publications
… We then aligned the available crystal structures of different BRDs to BPTF-DC-BPi-11 to
investigate the molecular basis of the selectivity (Figure S3). We found that the aspartic acid …

Discovery of high-affinity small-molecule binders of the epigenetic reader YEATS4

AT Londregan, K Aitmakhanova, J Bennett… - Journal of medicinal …, 2022 - ACS Publications
… X-ray crystal structure of compound 3b and YEATS4 and modeled binding pose of compound
3d. (A) X-ray crystal structure of compound 3b bound to YEATS4 at 2.58 Å resolution. PDB …