Review of databases for experimentally validated human microRNA–mRNA interactions
… databases with experimentally validated targets, human data, … databases that curate
experimentally validated data on … Similarly, databases such as miRGator, miRSystem, miRGate …
experimentally validated data on … Similarly, databases such as miRGator, miRSystem, miRGate …
Computational resources for analysis of miRNA targetome
… tools and databases developed for the miRNA target. It … curated 3576 miRNA target interactions
between 2297 target genes and 657 miRNAs for 17 species including humans, mice, rats…
between 2297 target genes and 657 miRNAs for 17 species including humans, mice, rats…
[HTML][HTML] Computational methods and software tools for functional analysis of miRNA data
A Garcia-Moreno, P Carmona-Saez - Biomolecules, 2020 - mdpi.com
… curated annotations. In this review, we describe the two workflows of miRNAs enrichment
analysis, based on target … in 500 mature miRNAs from human, mouse, and rat being associated …
analysis, based on target … in 500 mature miRNAs from human, mouse, and rat being associated …
[HTML][HTML] Integrative approaches for analysis of mRNA and microRNA high-throughput data
PV Nazarov, S Kreis - Computational and Structural Biotechnology Journal, 2021 - Elsevier
… It is based on manual curation of around 11 k publications … of predicted targets are available
for human, mouse, rat dog … for human miRNAs, only ~10% of the recorded miRNA targets …
for human, mouse, rat dog … for human miRNAs, only ~10% of the recorded miRNA targets …
miRNA, siRNA, and lncRNA: Recent Development of Bioinformatics Tools and Databases in Support of Combating Different Diseases
C Chakraborty, M Bhattacharya… - Current …, 2024 - ingentaconnect.com
… profiles database. It is used for the coexpression analysis of miRNA and target mRNAs,
which is based on miRNA-seq and … miRGate: a curated database of human, mouse and rat …
which is based on miRNA-seq and … miRGate: a curated database of human, mouse and rat …
Turning data to knowledge: Online tools, databases, and resources in microRNA research
I Blass, K Zohar, M Linial - Systems Biology of MicroRNAs in Cancer, 2022 - Springer
… targets, other miRNAs can pair with 100s of different mRNAs. Moreover, among the ~2600
reported human miRNAs… with supporting evidence from 7.2 k manually curated publications. A …
reported human miRNAs… with supporting evidence from 7.2 k manually curated publications. A …
[HTML][HTML] An Evaluation of the Fasciola hepatica miRnome Predicts a Targeted Regulation of Mammalian Innate Immune Responses
A Ricafrente, H Nguyen, N Tran… - Frontiers in Immunology, 2021 - frontiersin.org
… This allows the parasite to freely migrate from the intestine, … , we predicted gene targets
within human innate immune cells… miRNA finally has the capacity to bind to a target mRNA and …
within human innate immune cells… miRNA finally has the capacity to bind to a target mRNA and …
Integrated Analysis of Hub Genes and MicroRNAs in Human Placental Tissues from In Vitro Fertilization-Embryo Transfer. Front. Endocrinol. 12: 774997. doi: 10.3389 …
S Yang, W Zheng, C Yang, R Zu, S Ran… - … advances in human …, 2023 - books.google.com
… Screening miRNA targets based on the overlapping results of the three databases and the
… in this review include mice, rats, boars, lambs, zebrafish and humans. We include some …
… in this review include mice, rats, boars, lambs, zebrafish and humans. We include some …
Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets
U Schmitz - MicroRNA Detection and Target Identification: Methods …, 2023 - Springer
… Positive training data is often retrieved from databases such as MiRTarBase [73] or TarBase
[74] that collect and curate validated miRNA/target interactions. Negative training datasets …
[74] that collect and curate validated miRNA/target interactions. Negative training datasets …
Identification of novel microRNAs associated with type 2 diabetes by an integrative bioinformatic analysis
MV Mencucci, AM Rojas-Mendoza, E Andrés-León… - Human Gene, 2022 - Elsevier
… of miRNA-mRNA interactions between DEGs and DEMs in rat … -mRNA interaction prediction
based on miRGate database (… set of possible targets, we identified 303 miRNA-mRNA pairs …
based on miRGate database (… set of possible targets, we identified 303 miRNA-mRNA pairs …