Review of databases for experimentally validated human microRNAmRNA interactions

D Kariuki, K Asam, BE Aouizerat, KA Lewis… - Database, 2023 - academic.oup.com
databases with experimentally validated targets, human data, … databases that curate
experimentally validated data on … Similarly, databases such as miRGator, miRSystem, miRGate

Computational resources for analysis of miRNA targetome

A Thakur, S Kamboj, M Kumar - MicroRNA in Human Malignancies, 2022 - Elsevier
… tools and databases developed for the miRNA target. It … curated 3576 miRNA target interactions
between 2297 target genes and 657 miRNAs for 17 species including humans, mice, rats

[HTML][HTML] Computational methods and software tools for functional analysis of miRNA data

A Garcia-Moreno, P Carmona-Saez - Biomolecules, 2020 - mdpi.com
curated annotations. In this review, we describe the two workflows of miRNAs enrichment
analysis, based on target … in 500 mature miRNAs from human, mouse, and rat being associated …

[HTML][HTML] Integrative approaches for analysis of mRNA and microRNA high-throughput data

PV Nazarov, S Kreis - Computational and Structural Biotechnology Journal, 2021 - Elsevier
… It is based on manual curation of around 11 k publications … of predicted targets are available
for human, mouse, rat dog … for human miRNAs, only ~10% of the recorded miRNA targets

miRNA, siRNA, and lncRNA: Recent Development of Bioinformatics Tools and Databases in Support of Combating Different Diseases

C Chakraborty, M Bhattacharya… - Current …, 2024 - ingentaconnect.com
… profiles database. It is used for the coexpression analysis of miRNA and target mRNAs,
which is based on miRNA-seq and … miRGate: a curated database of human, mouse and rat

Turning data to knowledge: Online tools, databases, and resources in microRNA research

I Blass, K Zohar, M Linial - Systems Biology of MicroRNAs in Cancer, 2022 - Springer
targets, other miRNAs can pair with 100s of different mRNAs. Moreover, among the ~2600
reported human miRNAs… with supporting evidence from 7.2 k manually curated publications. A …

[HTML][HTML] An Evaluation of the Fasciola hepatica miRnome Predicts a Targeted Regulation of Mammalian Innate Immune Responses

A Ricafrente, H Nguyen, N Tran… - Frontiers in Immunology, 2021 - frontiersin.org
… This allows the parasite to freely migrate from the intestine, … , we predicted gene targets
within human innate immune cells… miRNA finally has the capacity to bind to a target mRNA and …

Integrated Analysis of Hub Genes and MicroRNAs in Human Placental Tissues from In Vitro Fertilization-Embryo Transfer. Front. Endocrinol. 12: 774997. doi: 10.3389 …

S Yang, W Zheng, C Yang, R Zu, S Ran… - … advances in human …, 2023 - books.google.com
… Screening miRNA targets based on the overlapping results of the three databases and the
… in this review include mice, rats, boars, lambs, zebrafish and humans. We include some …

Overview of Computational and Experimental Methods to Identify Tissue-Specific MicroRNA Targets

U Schmitz - MicroRNA Detection and Target Identification: Methods …, 2023 - Springer
… Positive training data is often retrieved from databases such as MiRTarBase [73] or TarBase
[74] that collect and curate validated miRNA/target interactions. Negative training datasets …

Identification of novel microRNAs associated with type 2 diabetes by an integrative bioinformatic analysis

MV Mencucci, AM Rojas-Mendoza, E Andrés-León… - Human Gene, 2022 - Elsevier
… of miRNA-mRNA interactions between DEGs and DEMs in rat … -mRNA interaction prediction
based on miRGate database (… set of possible targets, we identified 303 miRNA-mRNA pairs …