Identifying genetic variants underlying phenotypic variation in plants without complete genomes

Y Voichek, D Weigel - Nature genetics, 2020 - nature.com
Structural variants and presence/absence polymorphisms are common in plant genomes,
yet they are routinely overlooked in genome-wide association studies (GWAS). Here, we …

A guide to genome‐wide association mapping in plants

LT Burghardt, ND Young, P Tiffin - Current Protocols in Plant …, 2017 - Wiley Online Library
Genome‐wide association studies (GWAS) have developed into a valuable approach for
identifying the genetic basis of phenotypic variation. In this article, we provide an overview of …

The AraGWAS Catalog: a curated and standardized Arabidopsis thaliana GWAS catalog

M Togninalli, Ü Seren, D Meng, J Fitz… - Nucleic acids …, 2018 - academic.oup.com
The abundance of high-quality genotype and phenotype data for the model organism
Arabidopsis thaliana enables scientists to study the genetic architecture of many complex …

From phenotypes to causal sequences: using genome wide association studies to dissect the sequence basis for variation of plant development

T Ogura, W Busch - Current opinion in plant biology, 2015 - Elsevier
Highlights•Genome Wide Association Studies (GWASs) have been conducted in 22 plant
species.•GWASs have uncovered novel mechanisms and genes underlying variation of …

Sequencing of natural strains of Arabidopsis thaliana with short reads

S Ossowski, K Schneeberger, RM Clark… - Genome …, 2008 - genome.cshlp.org
Whole-genome hybridization studies have suggested that the nuclear genomes of
accessions (natural strains) of Arabidopsis thaliana can differ by several percent of their …

Status and prospects of genome‐wide association studies in plants

L Tibbs Cortes, Z Zhang, J Yu - The plant genome, 2021 - Wiley Online Library
Genome‐wide association studies (GWAS) have developed into a powerful and ubiquitous
tool for the investigation of complex traits. In large part, this was fueled by advances in …

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

S Atwell, YS Huang, BJ Vilhjálmsson, G Willems… - Nature, 2010 - nature.com
Although pioneered by human geneticists as a potential solution to the challenging problem
of finding the genetic basis of common human diseases,, genome-wide association (GWA) …

Natural variations and genome-wide association studies in crop plants

X Huang, B Han - Annual review of plant biology, 2014 - annualreviews.org
Natural variants of crops are generated from wild progenitor plants under both natural and
human selection. Diverse crops that are able to adapt to various environmental conditions …

easyGWAS: a cloud-based platform for comparing the results of genome-wide association studies

DG Grimm, D Roqueiro, PA Salomé… - The Plant …, 2017 - academic.oup.com
The ever-growing availability of high-quality genotypes for a multitude of species has
enabled researchers to explore the underlying genetic architecture of complex phenotypes …

[HTML][HTML] Genome-wide association studies in plants: the missing heritability is in the field

B Brachi, GP Morris, JO Borevitz - Genome biology, 2011 - Springer
Genome-wide association studies in plants: the missing heritability is in the field | Genome
Biology Skip to main content SpringerLink Account Menu Find a journal Publish with us …