Screening diversity and distribution of Copia retrotransposons reveals a specific amplification of BARE1 elements in genomes of the polyploid Hordeum murinum …

M Ourari, O Coriton, G Martin, V Huteau, J Keller… - Genetica, 2020 - Springer
We explored diversity, distribution and evolutionary dynamics of Ty1-Copia retrotransposons
in the genomes of the Hordeum murinum polyploid complex and related taxa. Phylogenetic …

Variability, Recombination, and Mosaic Evolution of the Barley BARE-1 Retrotransposon

CM Vicient, R Kalendar, AH Schulman - Journal of Molecular Evolution, 2005 - Springer
BARE-1 is a highly abundant, copia-like, LTR (long terminal repeat) retrotransposon in the
genus Hordeum. The LTRs provide the promoter, terminator, and polyadenylation signals …

Retrotransposon BARE-1 is a major, dispersed component of the barley (Hordeum vulgare L.) genome

A Suoniemi, K Anamthawat-Jónsson, T Arna… - Plant Molecular …, 1996 - Springer
The barley BARE-1 is a transcribed, copia-like retroelement with well-conserved functional
domains, an active promoter, and a copy number of at least 3× 10 4. We examined its …

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

CM Vicient, A Suoniemi, K Anamthawat-Jónsson… - The Plant …, 1999 - academic.oup.com
The replicative retrotransposon life cycle offers the potential for explosive increases in copy
number and consequent inflation of genome size. The BARE-1 retrotransposon family of …

Structure, functionality, and evolution of the BARE-1 retrotransposon of barley

CM Vicient, R Kalendar… - … Elements and Genome …, 2000 - Springer
The BARE-1 retrotransposon is a major, active component of the genome of barley
(Hordeum vulgare L.) and other Hordeum species. Copia-like in its organization, it consists …

A movable feast: diverse retrotransposons and their contribution to barley genome dynamics

AH Schulman, R Kalendar - Cytogenetic and genome research, 2005 - karger.com
Cellular genes comprise at most 5% of the barley genome; the rest is occupied primarily by
retrotransposons. Retrotransposons move intracellularly by a replicative mechanism similar …

BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.)

I Manninen, AH Schulman - Plant Molecular Biology, 1993 - Springer
Retroviruses and retrotransposons make up the broad class of retroelements replicating and
transposing via reverse transcriptase. Retroelements have recently been found to be …

Variability of the chromosomal distribution of Ty3-gypsy retrotransposons in the populations of two wild Triticeae species

A Belyayev, O Raskina, E Nevo - Cytogenetic and Genome Research, 2005 - karger.com
Here, we report data on the population variability of Ty3-gypsy retrotransposons in genomes
of Aegilops speltoides (2n= 2x= 14) and Hordeum spontaneum (2n= 2x= 14). Based on the …

BARE retrotransposons produce multiple groups of rarely polyadenylated transcripts from two differentially regulated promoters

W Chang, AH Schulman - The Plant Journal, 2008 - Wiley Online Library
The BARE retrotransposon family comprises more than 104 copies in the barley (Hordeum
vulgare) genome. The element is bounded by long terminal repeats (LTRs, 1829 bp) …

Variation in Copy Number of Ty3/Gypsy Centromeric Retrotransposons in the Genomes of Thinopyrum intermedium and Its Diploid Progenitors

MG Divashuk, TML Khuat, PY Kroupin, IV Kirov… - PLoS …, 2016 - journals.plos.org
Speciation and allopolyploidization in cereals may be accompanied by dramatic changes in
abundance of centromeric repeated transposable elements. Here we demonstrate that the …