Forman persistent Ricci curvature (FPRC)-based machine learning models for protein–ligand binding affinity prediction
Artificial intelligence (AI) techniques have already been gradually applied to the entire drug
design process, from target discovery, lead discovery, lead optimization and preclinical …
design process, from target discovery, lead discovery, lead optimization and preclinical …
Ollivier persistent Ricci curvature-based machine learning for the protein–ligand binding affinity prediction
Efficient molecular featurization is one of the major issues for machine learning models in
drug design. Here, we propose a persistent Ricci curvature (PRC), in particular, Ollivier PRC …
drug design. Here, we propose a persistent Ricci curvature (PRC), in particular, Ollivier PRC …
Molecular persistent spectral image (Mol-PSI) representation for machine learning models in drug design
Artificial intelligence (AI)-based drug design has great promise to fundamentally change the
landscape of the pharmaceutical industry. Even though there are great progress from …
landscape of the pharmaceutical industry. Even though there are great progress from …
Persistent spectral–based machine learning (PerSpect ML) for protein-ligand binding affinity prediction
Molecular descriptors are essential to not only quantitative structure-activity relationship
(QSAR) models but also machine learning–based material, chemical, and biological data …
(QSAR) models but also machine learning–based material, chemical, and biological data …
[HTML][HTML] Structure-based protein–ligand interaction fingerprints for binding affinity prediction
Binding affinity prediction (BAP) using protein–ligand complex structures is crucial to
computer-aided drug design, but remains a challenging problem. To achieve efficient and …
computer-aided drug design, but remains a challenging problem. To achieve efficient and …
Persistent spectral based ensemble learning (PerSpect-EL) for protein–protein binding affinity prediction
Protein–protein interactions (PPIs) play a significant role in nearly all cellular and biological
activities. Data-driven machine learning models have demonstrated great power in PPIs …
activities. Data-driven machine learning models have demonstrated great power in PPIs …
[HTML][HTML] BiComp-DTA: Drug-target binding affinity prediction through complementary biological-related and compression-based featurization approach
M Kalemati, M Zamani Emani… - PLOS Computational …, 2023 - journals.plos.org
Drug-target binding affinity prediction plays a key role in the early stage of drug discovery.
Numerous experimental and data-driven approaches have been developed for predicting …
Numerous experimental and data-driven approaches have been developed for predicting …
Hypergraph-based persistent cohomology (HPC) for molecular representations in drug design
Artificial intelligence (AI) based drug design has demonstrated great potential to
fundamentally change the pharmaceutical industries. Currently, a key issue in AI-based drug …
fundamentally change the pharmaceutical industries. Currently, a key issue in AI-based drug …
Persistent path-spectral (PPS) based machine learning for protein–ligand binding affinity prediction
Molecular descriptors are essential to quantitative structure activity/property relationship
(QSAR/QSPR) models and machine learning models. Here we propose persistent path …
(QSAR/QSPR) models and machine learning models. Here we propose persistent path …
[HTML][HTML] SMPLIP-Score: predicting ligand binding affinity from simple and interpretable on-the-fly interaction fingerprint pattern descriptors
In drug discovery, rapid and accurate prediction of protein–ligand binding affinities is a
pivotal task for lead optimization with acceptable on-target potency as well as …
pivotal task for lead optimization with acceptable on-target potency as well as …