The increasing number of available genomic data allowed the development of
phylogenomic analytical tools. Current methods compile information from single gene …

We have developed a semi-automatic methodology to reconstruct the phylogenetic species
tree in Protozoa, integrating different phylogenetic algorithms and programs, and …

Background In the past decade, transcriptome data have become an important component
of many phylogenetic studies. They are a cost-effective source of protein-coding gene …

Structural phylogenomics refers to the combined use of evolutionary and structural
information in a bioinformatics analysis. The term phylogenomics refers to two distinct tasks …

Molecular phylogenetics relies on accurate identification of orthologous sequences among
the taxa of interest. Most orthology inference programs available for use in phylogenomics …

Phylogenomic databases provide orthology predictions for species with fully sequenced
genomes. Although the goal seems well-defined, the content of these databases differs …

Phylogenomics is the practice of attempting to infer evolutionary relationships at a genome-
level. This is becoming a standard step in the characterization of newly recovered genomes …

All life on earth shares a common ancestor, and the aim of phylogenetic systematics is to
reconstruct the tree or network of life. Shortly after the availability of the first protein …

Phylogenomics aims at reconstructing the evolutionary histories of organisms taking into
account whole genomes or large fractions of genomes. Phylogenomics has significant …

Phylogenomics is a new field that infers evolutionary relationships of taxa at the genome-
scale level. The increment of molecular data may raise the potential bias as the limiting …