Structural mimicry of retroviral tat proteins by constrained β-hairpin peptidomimetics: ligands with high affinity and selectivity for viral TAR RNA regulatory elements

Z Athanassiou, RLA Dias, K Moehle… - Journal of the …, 2004 - ACS Publications
An approach is described to the design of β-hairpin peptidomimetic ligands for bovine
immunodeficiency virus (BIV) Tat protein, which inhibit binding to its transactivator response …

Structure-Guided Peptidomimetic Design Leads to Nanomolar β-Hairpin Inhibitors of the Tat−TAR Interaction of Bovine Immunodeficiency Virus,

Z Athanassiou, K Patora, RLA Dias, K Moehle… - Biochemistry, 2007 - ACS Publications
The Tat protein of immunodeficiency viruses is the main activator of viral gene expression.
By binding specifically to its cognate site, the transactivator response element (TAR), Tat …

TAR RNA Recognition by a Cyclic Peptidomimetic of Tat Protein,

TC Leeper, Z Athanassiou, RLA Dias, JA Robinson… - Biochemistry, 2005 - ACS Publications
The search for new antiviral drugs that repress HIV viral replication by blocking
transactivation of viral RNA transcription has long been advocated as an approach to novel …

[HTML][HTML] Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors

SS Chavali, SM Mali, JL Jenkins, R Fasan… - Journal of Biological …, 2020 - ASBMB
RNA-protein interfaces control key replication events during the HIV-1 life cycle. The viral
trans-activator of transcription (Tat) protein uses an archetypal arginine-rich motif (ARM) to …

Essential structural requirements for specific recognition of HIV TAR RNA by peptide mimetics of Tat protein

A Davidson, K Patora-Komisarska… - Nucleic acids …, 2011 - academic.oup.com
The pharmacological disruption of the interaction between the HIV Tat protein and its
cognate transactivation response RNA (TAR) would generate novel anti-viral drugs with a …

Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein

A Davidson, TC Leeper… - Proceedings of the …, 2009 - National Acad Sciences
The interaction of the HIV-1 transactivator protein Tat with its transactivation response (TAR)
RNA is an essential step in viral replication and therefore an attractive target for developing …

HIV-1 TAR RNA recognition by an unnatural biopolymer

X Wang, I Huq, TM Rana - Journal of the American Chemical …, 1997 - ACS Publications
Small peptides with unnatural backbones that can bind with high affinity to any
predetermined RNA structure would provide useful tools in molecular biology and medicine …

α‐Helix‐Mimetic Foldamers for Targeting HIV‐1 TAR RNA

D Maity, S Kumar, F Curreli, AK Debnath… - … A European Journal, 2019 - Wiley Online Library
An oligopyridylamide‐based foldamer approach has been employed to target HIV TAR RNA‐
TAT assembly as a model system to study RNA‐protein interactions. The oligopyridylamide …

Selective binding of TAR RNA by a Tat-derived β-peptide

MA Gelman, S Richter, H Cao, N Umezawa… - Organic …, 2003 - ACS Publications
The interaction between the HIV-1 Tat protein and the TAR RNA element in the nascent viral
genomic transcript is required for viral replication. An 11-residue β-peptide (1), an all-β …

Development of small molecules with a noncanonical binding mode to HIV-1 trans activation response (TAR) RNA

FA Abulwerdi, MD Shortridge… - Journal of medicinal …, 2016 - ACS Publications
Small molecules that bind to RNA potently and specifically are relatively rare. The study of
molecules that bind to the HIV-1 transactivation response (TAR) hairpin, a cis-acting HIV …