Structure of HIV TAR in complex with a Lab-Evolved RRM provides insight into duplex RNA recognition and synthesis of a constrained peptide that impairs …

IA Belashov, DW Crawford, CE Cavender… - Nucleic acids …, 2018 - academic.oup.com
Natural and lab-evolved proteins often recognize their RNA partners with exquisite affinity.
Structural analysis of such complexes can offer valuable insight into sequence-selective …

Synthesis of alanine and proline amino acids with amino or guanidinium substitution on the side chain

Z Zhang, A Van Aerschot, C Hendrix, R Busson… - Tetrahedron, 2000 - Elsevier
Competitive binding of peptides containing basic amino acids to disrupt or prevent the Tat–
TAR interaction could result in diminished transcription as well as translation and hence …

Screening of a branched peptide library with HIV-1 TAR RNA

DI Bryson, W Zhang, WK Ray, WL Santos - Molecular BioSystems, 2009 - pubs.rsc.org
The recognition that RNA is more than just an intermediate in the information transfer from
genetic code to fully functional protein has placed it at the forefront of chemical research …

Characterization of the solution conformations of unbound and Tat peptide-bound forms of HIV-1 TAR RNA

KS Long, DM Crothers - Biochemistry, 1999 - ACS Publications
Basic peptides from the carboxy terminus of the HIV-1 Tat protein bind to the apical stem−
loop region of TAR RNA with high affinity and moderate specificity. The conformations of the …

Inhibition of an HIV-1 Tat-derived peptide binding to TAR RNA by aminoglycoside antibiotics

HY Mei, AA Galan, NS Halim, DP Mack… - Bioorganic & Medicinal …, 1995 - Elsevier
Aminoglycoside antibiotics were found for the first time to inhibit an HIV-1 Tat-derived
peptide binding to TAR RNA. The IC50 values of neomycin, streptomycin, and gentamicin …

Synthesis and assay of isoquinoline derivatives as HIV-1 Tat–TAR interaction inhibitors

M He, D Yuan, W Lin, R Pang, X Yu, M Yang - Bioorganic & medicinal …, 2005 - Elsevier
Four new isoquinoline derivatives bearing guanidinium group or amino group-terminated
side chain were synthesized to target the HIV-1 TAR element. Their abilities to bind TAR …

How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape

MF Bardaro Jr, Z Shajani… - Nucleic acids …, 2009 - academic.oup.com
Abstract The HIV-1 TAR RNA represents a well-known paradigm to study the role of
dynamics and conformational change in RNA function. This regulatory RNA changes …

Inhibition of HIV-1 replication by anti-trans-activation responsive polyamide nucleotide analog

N Kaushik, A Basu, VN Pandey - Antiviral research, 2002 - Elsevier
Efficient replication and gene expression of human immunodeficiency virus-1 (HIV-1)
involves specific interaction of the viral protein Tat, with its trans-activation responsive …

Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains

B Berkhout, KT Jeang - Nucleic acids research, 1991 - academic.oup.com
Trans-activation of HIV-1 by the Tat protein is mediated through a cis-acting element (TAR)
in the viral RNA. In order to obtain further insight into the molecular interactions for trans …

Controlling human immunodeficiency virus type 1 gene expression by unnatural peptides

I Huq, YH Ping, N Tamilarasu, TM Rana - Biochemistry, 1999 - ACS Publications
Small unnatural peptides that target specific RNA structures have the potential to control
biological processes. RNA− protein interactions are important in many cellular functions …