A point cloud-based deep learning strategy for protein–ligand binding affinity prediction
Y Wang, S Wu, Y Duan, Y Huang - Briefings in bioinformatics, 2022 - academic.oup.com
There is great interest to develop artificial intelligence-based protein–ligand binding affinity
models due to their immense applications in drug discovery. In this paper, PointNet and …
models due to their immense applications in drug discovery. In this paper, PointNet and …
Planet: a multi-objective graph neural network model for protein–ligand binding affinity prediction
X Zhang, H Gao, H Wang, Z Chen… - Journal of Chemical …, 2023 - ACS Publications
Predicting protein–ligand binding affinity is a central issue in drug design. Various deep
learning models have been published in recent years, where many of them rely on 3D …
learning models have been published in recent years, where many of them rely on 3D …
A cascade graph convolutional network for predicting protein–ligand binding affinity
Accurate prediction of binding affinity between protein and ligand is a very important step in
the field of drug discovery. Although there are many methods based on different …
the field of drug discovery. Although there are many methods based on different …
AK-score: accurate protein-ligand binding affinity prediction using an ensemble of 3D-convolutional neural networks
Accurate prediction of the binding affinity of a protein-ligand complex is essential for efficient
and successful rational drug design. Therefore, many binding affinity prediction methods …
and successful rational drug design. Therefore, many binding affinity prediction methods …
Development of a graph convolutional neural network model for efficient prediction of protein-ligand binding affinities
J Son, D Kim - PloS one, 2021 - journals.plos.org
Prediction of protein-ligand interactions is a critical step during the initial phase of drug
discovery. We propose a novel deep-learning-based prediction model based on a graph …
discovery. We propose a novel deep-learning-based prediction model based on a graph …
DeepDTAF: a deep learning method to predict protein–ligand binding affinity
Biomolecular recognition between ligand and protein plays an essential role in drug
discovery and development. However, it is extremely time and resource consuming to …
discovery and development. However, it is extremely time and resource consuming to …
DLSSAffinity: protein–ligand binding affinity prediction via a deep learning model
H Wang, H Liu, S Ning, C Zeng, Y Zhao - Physical Chemistry Chemical …, 2022 - pubs.rsc.org
Evaluating the protein–ligand binding affinity is a substantial part of the computer-aided drug
discovery process. Most of the proposed computational methods predict protein–ligand …
discovery process. Most of the proposed computational methods predict protein–ligand …
Onionnet: a multiple-layer intermolecular-contact-based convolutional neural network for protein–ligand binding affinity prediction
Computational drug discovery provides an efficient tool for helping large-scale lead
molecule screening. One of the major tasks of lead discovery is identifying molecules with …
molecule screening. One of the major tasks of lead discovery is identifying molecules with …
Deepbindgcn: Integrating molecular vector representation with graph convolutional neural networks for protein–ligand interaction prediction
H Zhang, KM Saravanan, JZH Zhang - Molecules, 2023 - mdpi.com
The core of large-scale drug virtual screening is to select the binders accurately and
efficiently with high affinity from large libraries of small molecules in which non-binders are …
efficiently with high affinity from large libraries of small molecules in which non-binders are …
Sfcnn: a novel scoring function based on 3D convolutional neural network for accurate and stable protein–ligand affinity prediction
Y Wang, Z Wei, L Xi - BMC bioinformatics, 2022 - Springer
Background Computer-aided drug design provides an effective method of identifying lead
compounds. However, success rates are significantly bottlenecked by the lack of accurate …
compounds. However, success rates are significantly bottlenecked by the lack of accurate …