Tutorial: guidelines for survival analysis with omics data

Z Zhao, J Zobolas, M Zucknick, T Aittokallio - arXiv preprint arXiv …, 2023 - arxiv.org
The identification of genomic, molecular and clinical markers predictive of patient survival is
important for developing personalized disease prevention, diagnostic and treatment …

Tutorial on survival modeling with applications to omics data

Z Zhao, J Zobolas, M Zucknick, T Aittokallio - Bioinformatics, 2024 - academic.oup.com
Motivation Identification of genomic, molecular and clinical markers prognostic of patient
survival is important for developing personalized disease prevention, diagnostic and …

[HTML][HTML] Cosmonet: An r package for survival analysis using screening-network methods

A Iuliano, A Occhipinti, C Angelini, I De Feis, P Liò - Mathematics, 2021 - mdpi.com
Identifying relevant genomic features that can act as prognostic markers for building
predictive survival models is one of the central themes in medical research, affecting the …

[HTML][HTML] DoSurvive: A webtool for investigating the prognostic power of a single or combined cancer biomarker

HW Wu, JD Wu, YP Yeh, TH Wu, CH Chao, W Wang… - Iscience, 2023 - cell.com
We present DoSurvive, a user-friendly survival analysis web tool and a cancer prognostic
biomarker centered database. DoSurvive is the first database that allows users to perform …

[HTML][HTML] Integrating clinical and multiple omics data for prognostic assessment across human cancers

B Zhu, N Song, R Shen, A Arora, MJ Machiela… - Scientific reports, 2017 - nature.com
Multiple omic profiles have been generated for many cancer types; however, comprehensive
assessment of their prognostic values across cancers is limited. We conducted a pan-cancer …

[HTML][HTML] Detecting survival-associated biomarkers from heterogeneous populations

T Saegusa, Z Zhao, H Ke, Z Ye, Z Xu, S Chen, T Ma - Scientific Reports, 2021 - nature.com
Detection of prognostic factors associated with patients' survival outcome helps gain insights
into a disease and guide treatment decisions. The rapid advancement of high-throughput …

Survboard: standardised benchmarking for multi-omics cancer survival models

D Wissel, N Janakarajan, A Grover, E Toniato… - bioRxiv, 2022 - biorxiv.org
Abstract High-throughput “omics” data, including genomic, transcriptomic, and epigenetic
data, have become increasingly produced and have contributed in recent years to the …

Ranking-Based Methods as a Versatile Statistical Formulation for the Analysis of Complex Biomedical Data and Patient Subgroup Identification

M Buyukozkan - 2022 - search.proquest.com
Biomedical datasets, which consist of molecular profiling data from patients in combination
with clinical parameters, pose complex statistical challenges due to their inherent …

SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data

Y Zhang, G Wong, G Mann, S Muller, JYH Yang - GigaScience, 2022 - academic.oup.com
Survival analysis is a branch of statistics that deals with both the tracking of time and the
survival status simultaneously as the dependent response. Current comparisons of survival …

Translating cancer 'omics' to improved outcomes

EA Vucic, KL Thu, K Robison, LA Rybaczyk… - Genome …, 2012 - genome.cshlp.org
The genomics era has yielded great advances in the understanding of cancer biology. At the
same time, the immense complexity of the cancer genome has been revealed, as well as a …