[HTML][HTML] In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies

M Montoliu-Nerin, M Sánchez-García… - Frontiers in fungal …, 2021 - frontiersin.org
Morphological characters and nuclear ribosomal DNA (rDNA) phylogenies have so far been
the basis of the current classifications of arbuscular mycorrhizal (AM) fungi. Improved …

Gene expression profiling in orchid mycorrhizae to decipher the molecular mechanisms of plant–fungus interactions

S De Rose, S Perotto, R Balestrini, F Sillo - Advances in Orchid Biology …, 2023 - Springer
In nature, orchid seed germination and early development both require an interaction
between the plant and some symbiotic fungi capable of forming orchid mycorrhizae (OM). In …

SeSaMe PS Function: Functional analysis of the whole metagenome sequencing data of the arbuscular mycorrhizal fungi

J Eun Kang, A Ciampi, M Hijri - Genomics, Proteomics and …, 2020 - academic.oup.com
In this study, we introduce a novel bioinformatics program, Spore-associated Symbiotic
Microbes Position-specific Function (SeSaMe PS Function), for position-specific functional …

Structural and functional genomics of symbiotic arbuscular mycorrhizal fungi

V Gianinazzi-Pearson, C Azcón-Aguilar… - Advances in fungal …, 2004 - Springer
The absorbing organs (roots, rhizomes) of nearly all terrestrial plant families host an intimate
symbiotic association, called a mycorrhiza, with specialized functional groups of soil fungi …

The PEG-responding desiccome of the alder microsymbiont Frankia alni

K Ghedira, E Harigua-Souiai, C Ben Hamda… - Scientific Reports, 2018 - nature.com
Actinorhizal plants are ecologically and economically important. Symbiosis with nitrogen-
fixing bacteria allows these woody dicotyledonous plants to colonise soils under nitrogen …

Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi

M Öpik, M Zobel, JJ Cantero, J Davison, JM Facelli… - Mycorrhiza, 2013 - Springer
We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal
fungi (AMF) by building a new global dataset targeting previously unstudied geographical …

Genomic analysis of intrinsically disordered proteins in cereals: From mining to meaning

M Choura, C Ebel, M Hanin - Gene, 2019 - Elsevier
Intrinsically disordered proteins (IDPs) are highly abundant in eukaryotic proteomes and
involved in key biological and cellular processes. Although some resources of disordered …

SeSaMe: metagenome sequence classification of arbuscular mycorrhizal fungi-associated microorganisms

J Eun Kang, A Ciampi, M Hijri - Genomics, Proteomics and …, 2020 - academic.oup.com
Arbuscular mycorrhizal fungi (AMF) are plant root symbionts that play key roles in plant
growth and soil fertility. They are obligate biotrophic fungi that form coenocytic …

The effector candidate repertoire of the arbuscular mycorrhizal fungus Rhizophagus clarus.

KS Toro, A Brachmann - 2016 - cabidigitallibrary.org
Background: Arbuscular mycorrhizal fungi (AMF) form an ecologically important symbiosis
with more than two thirds of studied land plants. Recent studies of plant-pathogen …

Kingdom-wide analysis of fungal protein-coding and tRNA genes reveals conserved patterns of adaptive evolution

R Wint, A Salamov, IV Grigoriev - Molecular biology and …, 2022 - academic.oup.com
Protein-coding genes evolved codon usage bias due to the combined but uneven effects of
adaptive and nonadaptive influences. Studies in model fungi agree on codon usage bias as …