The Cycas genome and the early evolution of seed plants

Y Liu, S Wang, L Li, T Yang, S Dong, T Wei, S Wu… - Nature Plants, 2022 - nature.com
Cycads represent one of the most ancient lineages of living seed plants. Identifying genomic
features uniquely shared by cycads and other extant seed plants, but not non-seed …

Expressed sequence tag analysis in Cycas, the most primitive living seed plant

ED Brenner, DW Stevenson, RW McCombie, MS Katari… - Genome Biology, 2003 - Springer
Background Cycads are ancient seed plants (living fossils) with origins in the Paleozoic.
Cycads are sometimes considered a'missing link'as they exhibit characteristics intermediate …

Charting the genomic landscape of seed-free plants

P Szövényi, A Gunadi, FW Li - Nature Plants, 2021 - nature.com
During the past few years several high-quality genomes has been published from
Charophyte algae, bryophytes, lycophytes and ferns. These genomes have not only …

Chloroplast Genome (cpDNA) of Cycas taitungensis and 56 cp Protein-Coding Genes of Gnetum parvifolium: Insights into cpDNA Evolution and Phylogeny of Extant …

CS Wu, YN Wang, SM Liu… - Molecular Biology and …, 2007 - academic.oup.com
Phylogenetic relationships among the 5 groups of extant seed plants are presently
unsettled. To reexamine this long-standing debate, we determine the complete chloroplast …

Phylogeny and divergence times of gymnosperms inferred from single-copy nuclear genes

Y Lu, JH Ran, DM Guo, ZY Yang, XQ Wang - PloS one, 2014 - journals.plos.org
Phylogenetic reconstruction is fundamental to study evolutionary biology and historical
biogeography. However, there was not a molecular phylogeny of gymnosperms represented …

Phylogenomics and coalescent analyses resolve extant seed plant relationships

Z Xi, JS Rest, CC Davis - PLoS One, 2013 - journals.plos.org
The extant seed plants include more than 260,000 species that belong to five main lineages:
angiosperms, conifers, cycads, Ginkgo, and gnetophytes. Despite tremendous effort using …

Between two fern genomes

EB Sessa, JA Banks, MS Barker, JP Der, AM Duffy… - …, 2014 - academic.oup.com
Ferns are the only major lineage of vascular plants not represented by a sequenced nuclear
genome. This lack of genome sequence information significantly impedes our ability to …

Duplicative transfer of a MADS box gene to a plant Y chromosome

S Matsunaga, E Isono, E Kejnovsky… - Molecular Biology …, 2003 - academic.oup.com
Y chromosomes carry genes with functions in male reproduction and often have few other
loci. Their evolution and the causes of genetic degeneration are of great interest. In addition …

Inference of higher-order relationships in the cycads from a large chloroplast data set

HS Rai, HE O'Brien, PA Reeves, RG Olmstead… - Molecular phylogenetics …, 2003 - Elsevier
We investigated higher-order relationships in the cycads, an ancient group of seed-bearing
plants, by examining a large portion of the chloroplast genome from seven species chosen …

Chloranthus genome provides insights into the early diversification of angiosperms

X Guo, D Fang, SK Sahu, S Yang, X Guang… - Nature …, 2021 - nature.com
Chloranthales remain the last major mesangiosperm lineage without a nuclear genome
assembly. We therefore assemble a high-quality chromosome-level genome of Chloranthus …