Unusual genome expansion and transcription suppression in ectomycorrhizal Tricholoma matsutake by insertions of transposable elements

B Min, H Yoon, J Park, YL Oh, WS Kong, JG Kim… - PloS one, 2020 - journals.plos.org
Genome sequencing of Tricholoma matsutake revealed its unusually large size as 189.0
Mbp, which is a consequence of extraordinarily high transposable element (TE) content. We …

The genome of Lyophyllum shimeji provides insight into the initial evolution of ectomycorrhizal fungal genomes

Y Kobayashi, TF Shibata, H Hirakawa… - DNA …, 2023 - academic.oup.com
Mycorrhizae are one of the most fundamental symbioses between plants and fungi, with
ectomycorrhizae being the most widespread in boreal forest ecosystems. Ectomycorrhizal …

Comparative Mitogenomic Analysis Reveals Dynamics of Intron Within and Between Tricholoma Species and Phylogeny of Basidiomycota

W Huang, H Feng, W Tu, C Xiong, X Jin, P Li… - Frontiers in …, 2021 - frontiersin.org
The genus of Tricholoma is a group of important ectomycorrhizal fungi. The overlapping of
morphological characteristics often leads to the confusion of Tricholoma species …

Genomic suppression subtractive hybridization as a tool to identify differences in mycorrhizal fungal genomes

C Murat, E Zampieri, M Vallino… - FEMS microbiology …, 2011 - academic.oup.com
Abstract Characterization of genomic variation among different microbial species, or different
strains of the same species, is a field of significant interest with a wide range of potential …

Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis

A Dallaire, BF Manley, M Wilkens, I Bista… - Genome …, 2021 - genome.cshlp.org
Arbuscular mycorrhizal (AM) fungi form mutualistic relationships with most land plant
species. AM fungi have long been considered as ancient asexuals. Long-term clonal …

The First Mitochondrial Genome for Geastrales (Sphaerobolus stellatus) Reveals Intron Dynamics and Large-Scale Gene Rearrangements of Basidiomycota

J Ye, J Cheng, Y Ren, W Liao, Q Li - Frontiers in Microbiology, 2020 - frontiersin.org
In this study, the mitogenome of artillery fungus, Sphaerobolus stellatus, was assembled and
compared with other Basidiomycota mitogenomes. The Sphaerobolus stellatus mitogenome …

Comparative mitogenome analysis of two ectomycorrhizal fungi (Paxillus) reveals gene rearrangement, intron dynamics, and phylogeny of basidiomycetes

Q Li, Y Ren, D Xiang, X Shi, J Zhao, L Peng, G Zhao - IMA fungus, 2020 - Springer
In this study, the mitogenomes of two Paxillus species were assembled, annotated and
compared. The two mitogenomes of Paxillus involutus and P. rubicundulus comprised …

Intra‐isolate genome variation in arbuscular mycorrhizal fungi persists in the transcriptome

E Boon, E Zimmerman, BF Lang… - Journal of evolutionary …, 2010 - academic.oup.com
Arbuscular mycorrhizal fungi (AMF) are heterokaryotes with an unusual genetic makeup.
Substantial genetic variation occurs among nuclei within a single mycelium or isolate. AMF …

Near-complete de novo assembly of Tricholoma bakamatsutake chromosomes revealed the structural divergence and differentiation of Tricholoma genomes

H Ichida, H Murata, S Hatakeyama… - G3: Genes …, 2023 - academic.oup.com
Tricholoma bakamatsutake, which is an edible ectomycorrhizal fungus associated with
Fagaceae trees, may have diverged before the other species in Tricholoma section Caligata …

The 287,403 bp Mitochondrial Genome of Ectomycorrhizal Fungus Tuber calosporum Reveals Intron Expansion, tRNA Loss, and Gene Rearrangement

X Li, L Li, Z Bao, W Tu, X He, B Zhang, L Ye… - Frontiers in …, 2020 - frontiersin.org
In the present study, the mitogenome of Tuber calosporum was assembled and analyzed.
The mitogenome of T. calosporum comprises 15 conserved protein-coding genes, two rRNA …