Phylogenomics and evolution of secondary metabolism in plant-associated fungi

JW Spatafora, KE Bushley - Current opinion in plant biology, 2015 - Elsevier
Highlights•Secondary metabolites are small, bioactive molecules that function in fungal
ecology.•Genomic sequencing has revealed greater diversity of secondary metabolite …

An overview of genomics, phylogenomics and proteomics approaches in Ascomycota

L Muggia, CG Ametrano, K Sterflinger, D Tesei - Life, 2020 - mdpi.com
Fungi are among the most successful eukaryotes on Earth: they have evolved strategies to
survive in the most diverse environments and stressful conditions and have been selected …

Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus

K Lin, E Limpens, Z Zhang, S Ivanov… - PLoS …, 2014 - journals.plos.org
Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to
their asexual nature and absence of a single cell stage with only one nucleus. This has …

[HTML][HTML] Whole-genome sequencing and analysis of the white-rot fungus Ceriporia lacerata reveals its phylogenetic status and the genetic basis of lignocellulose …

Z Mao, P Yang, H Liu, Y Mao, Y Lei, D Hou… - Frontiers in …, 2022 - frontiersin.org
Ceriporia lacerata is an endophytic white-rot fungus that has lignocellulolytic and terpenoid-
biosynthetic abilities. However, little is known about the genomic architecture of this fungus …

Endophytic fungi, occurrence, and metabolites

MV Tejesvi, AM Pirttilä - Physiology and Genetics: Selected Basic and …, 2018 - Springer
Great progress has been made in the recent years in the endophytic fungal research. The
classification and definition of endophytes have been revisited, as the complex community …

Characterization of the mating type (MAT) locus in the Phialocephala fortinii sl–Acephala applanata species complex

PL Zaffarano, A Duò, CR Grünig - Fungal Genetics and Biology, 2010 - Elsevier
Members of the Phialocephala fortinii sensu lato–Acephala applanata species complex
(PAC) are the dominant root endophytes of woody plants in temperate and boreal forests. In …

Hidden fungi: Combining culture-dependent and-independent DNA barcoding reveals inter-plant variation in species richness of endophytic root fungi in Elymus …

AK Høyer, TR Hodkinson - Journal of Fungi, 2021 - mdpi.com
The root endophyte community of the grass species Elymus repens was investigated using
both a culture-dependent approach and a direct amplicon sequencing method across five …

Hybrid genome assembly and annotation of Paenibacillus pasadenensis strain R16 reveals insights on endophytic life style and antifungal activity

A Passera, L Marcolungo, P Casati, M Brasca… - PLoS …, 2018 - journals.plos.org
Bacteria of the Paenibacillus genus are becoming important in many fields of science,
including agriculture, for their positive effects on the health of plants. However, there are little …

Metagenome sequence of E laphomyces granulatus from sporocarp tissue reveals A scomycota ectomycorrhizal fingerprints of genome expansion and a P …

CA Quandt, A Kohler, CN Hesse… - Environmental …, 2015 - Wiley Online Library
Many obligate symbiotic fungi are difficult to maintain in culture, and there is a growing need
for alternative approaches to obtaining tissue and subsequent genomic assemblies from …

Translating phytobiomes from theory to practice: ecological and evolutionary considerations

CV Hawkes, EW Connor - Phytobiomes, 2017 - Am Phytopath Society
The tremendous potential of the plant microbiome to improve plant growth and production
means that microbes are in the process of becoming an everyday tool in agronomic …