Spin labeling of long RNAs via click reaction and enzymatic ligation

MF Vicino, C Wuebben, M Kerzhner, M Famulok… - … : Methods and Protocols, 2022 - Springer
Electron paramagnetic resonance (EPR) is a spectroscopic method for investigating
structures, conformational changes, and dynamics of biomacromolecules, for example …

[PDF][PDF] Site-Directed Spin Labeling of Large Riboswitches Using Click Chemistry

M Kerzhner - 2019 - core.ac.uk
Due to the conformational variability of riboswitches, their structural analysis is of a great
importance. The most frequently used techniques to investigate dynamic processes within …

Spin Labeling of RNA Using “Click” Chemistry for Coarse-grained Structure Determination via Pulsed Electron-electron Double Resonance Spectroscopy

MF Vicino, T Hett, O Schiemann - Bio-protocol, 2021 - bio-protocol.org
Understanding the function of oligonucleotides on a molecular level requires methods for
studying their structure, conformational changes, and internal dynamics. Various biophysical …

A review on recent advances in methods for site-directed spin labeling of long RNAs

K Huang, X Fang - International Journal of Biological Macromolecules, 2023 - Elsevier
RNAs are important biomolecules that play essential roles in various cellular processes and
are crucially linked with many human diseases. The key to elucidate the mechanisms …

[HTML][HTML] Site-Directed Spin Labeling of RNA with a Gem-Diethylisoindoline Spin Label: PELDOR, Relaxation, and Reduction Stability

C Wuebben, S Blume, D Abdullin, D Brajtenbach… - Molecules, 2019 - mdpi.com
Ribonucleic acid function is governed by its structure, dynamics, and interaction with other
biomolecules and influenced by the local environment. Thus, methods are needed that …

High-yield spin labeling of long RNAs for electron paramagnetic resonance spectroscopy

M Kerzhner, H Matsuoka, C Wuebben, M Famulok… - Biochemistry, 2018 - ACS Publications
Site-directed spin labeling is a powerful tool for investigating the conformation and dynamics
of biomacromolecules such as RNA. Here we introduce a spin labeling strategy based on …

Nitroxide-labeled pyrimidines for non-covalent spin-labeling of abasic sites in DNA and RNA duplexes

SA Shelke, GB Sandholt, ST Sigurdsson - Organic & Biomolecular …, 2014 - pubs.rsc.org
Non-covalent and site-directed spin labeling gives easy access to spin-labeled nucleic acids
for the study of their structure and dynamics by electron paramagnetic resonance (EPR) …

Synthesis of DNA and RNA containing rigid spin-and fluorescent labels for studies by EPR and fluorescence spectroscopies

ALJ Segler - 2021 - opinvisindi.is
To gain information about the function of nucleic acids, their structure and dynamics need to
be investigated. Electron paramagnetic resonance (EPR)-and fluorescence spectroscopies …

Posttranscriptional spin labeling of RNA by tetrazine-based cycloaddition

C Domnick, G Hagelueken, F Eggert… - Organic & …, 2019 - pubs.rsc.org
The site-specific introduction of spin labels into RNA for distance measurements by EPR
gives insight into its solution structure. We here present a method for spin labeling of in vitro …

Spin labeling of oligonucleotides with the nitroxide TPA and use of PELDOR, a pulse EPR method, to measure intramolecular distances

O Schiemann, N Piton, J Plackmeyer, BE Bode… - Nature protocols, 2007 - nature.com
In this protocol, we describe the facile synthesis of the nitroxide spin-label 2, 2, 5, 5-
tetramethyl-pyrrolin-1-oxyl-3-acetylene (TPA) and then its coupling to DNA/RNA through …