Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

JE McCormack, JM Maley, SM Hird… - Molecular Phylogenetics …, 2012 - Elsevier
Next generation sequencing (NGS) technologies are revolutionizing many biological
disciplines but have been slow to take root in phylogeography. This is partly due to the …

Avian genomics: fledging into the wild!

RHS Kraus, M Wink - Journal of Ornithology, 2015 - Springer
Next generation sequencing (NGS) technologies provide great resources to study bird
evolution and avian functional genomics. They also allow for the identification of suitable …

Comparative phylogenomics, a stepping stone for bird biodiversity studies

J Stiller, G Zhang - Diversity, 2019 - mdpi.com
Birds are a group with immense availability of genomic resources, and hundreds of
forthcoming genomes at the doorstep. We review recent developments in whole genome …

Genomic approaches to understanding population divergence and speciation in birds

DPL Toews, L Campagna, SA Taylor… - The Auk …, 2016 - academic.oup.com
The widespread application of high-throughput sequencing in studying evolutionary
processes and patterns of diversification has led to many important discoveries. However …

Phylogenomic analyses data of the avian phylogenomics project

ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde… - …, 2015 - academic.oup.com
Background Determining the evolutionary relationships among the major lineages of extant
birds has been one of the biggest challenges in systematic biology. To address this …

A Linkage Map of the Zebra Finch Taeniopygia guttata Provides New Insights Into Avian Genome Evolution

J Stapley, TR Birkhead, T Burke, J Slate - Genetics, 2008 - academic.oup.com
Passeriformes are the largest order of birds and one of the most widely studied groups in
evolutionary biology and ecology. Until recently genomic tools in passerines relied on …

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

JE McCormack, MG Harvey, BC Faircloth… - PloS one, 2013 - journals.plos.org
Evolutionary relationships among birds in Neoaves, the clade comprising the vast majority of
avian diversity, have vexed systematists due to the ancient, rapid radiation of numerous …

Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species

A Künstner, JBW Wolf, N Backström… - Molecular …, 2010 - Wiley Online Library
Next‐generation sequencing technology provides an attractive means to obtain large‐scale
sequence data necessary for comparative genomic analysis. To analyse the patterns of …

Phylogenetics of modern birds in the era of genomics

SV Edwards, W Bryan Jennings… - Proceedings of the …, 2005 - royalsocietypublishing.org
In the 14 years since the first higher-level bird phylogenies based on DNA sequence data,
avian phylogenetics has witnessed the advent and maturation of the genomics era, the …

Genomic variation in a widespread Neotropical bird (Xenops minutus) reveals divergence, population expansion, and gene flow

MG Harvey, RT Brumfield - Molecular Phylogenetics and Evolution, 2015 - Elsevier
The demographic and phylogeographic histories of species provide insight into the
processes responsible for generating biological diversity, and genomic datasets are now …