Background Chloroplasts are intracellular organelles that enable plants to conduct
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …

Background Chloroplasts are organelles that conduct photosynthesis in plant and algal
cells. The information chloroplast genome contained is widely used in agriculture and …

Background Chloroplast is an essential organelle in plants which contains independent
genome. Chloroplast genomes have been widely used for plant phylogenetic inference …

This is an automated pipeline that extracts and reconstructs chloroplast genomes from
whole genome shotgun data. It is capable to assemble the incidentally sequenced …

Background Second generation sequencing has permitted detailed sequence
characterisation at the whole genome level of a growing number of non-model organisms …

Chloroplast genomes have been widely used in studying plant phylogeny and evolution.
Several chloroplast genome visualization tools have been developed to display the …

DNA sequencing has been revolutionized by the development of high-throughput
sequencing technologies. Plummeting costs and the massive throughput capacities of …

Background: Chloroplast genes and genomes are the most important genomic data for plant
phylogeny and DNA barcoding. Since the rapid development of high throughput sequencing …

Background The complete sequences of chloroplast genomes provide wealthy information
regarding the evolutionary history of species. With the advance of next-generation …

Motivation Chloroplast genomes are now produced in the hundreds for angiosperm
phylogenetics projects, but current methods for annotation, alignment and tree estimation …