Bioinformatic methods for the analysis of high-throughput RNA sequencing in arbuscular mycorrhizal fungi
F Venice, A Salvioli di Fossalunga… - … Mycorrhizal Fungi: Methods …, 2020 - Springer
RNA-seq is a powerful method for transcriptome profiling that allows the detection of total
RNA present in a single cell, tissues, or organs. mRNA-seq is focused on protein-coding …
RNA present in a single cell, tissues, or organs. mRNA-seq is focused on protein-coding …
Ultra-low input transcriptomics reveal the spore functional content and phylogenetic affiliations of poorly studied arbuscular mycorrhizal fungi
D Beaudet, ECH Chen, S Mathieu, G Yildirir… - DNA …, 2018 - academic.oup.com
Arbuscular mycorrhizal fungi (AMF) are a group of soil microorganisms that establish
symbioses with the vast majority of land plants. To date, generation of AMF coding …
symbioses with the vast majority of land plants. To date, generation of AMF coding …
Utility of large subunit for environmental sequencing of arbuscular mycorrhizal fungi: a new reference database and pipeline.
CS Delavaux, SL Sturmer, MR Wagner… - New …, 2021 - search.ebscohost.com
Keywords: amplicon sequencing; bioinformatics; eDNA; Glomeromycota; large subunit EN
amplicon sequencing bioinformatics eDNA Glomeromycota large subunit 3048 3052 5 …
amplicon sequencing bioinformatics eDNA Glomeromycota large subunit 3048 3052 5 …
Fungal gene expression levels do not display a common mode of distribution
M Nowrousian - BMC Research Notes, 2013 - Springer
Background RNA-seq studies in metazoa have revealed a distinct, double-peaked (bimodal)
distribution of gene expression independent of species and cell type. However, two studies …
distribution of gene expression independent of species and cell type. However, two studies …
Barcoded NS31/AML2 primers for sequencing of arbuscular mycorrhizal communities in environmental samples
BST Morgan… - Applications in plant …, 2017 - Wiley Online Library
Premise of the study: Arbuscular mycorrhizal fungi (AMF) are globally important root
symbioses that enhance plant growth and nutrition and influence ecosystem structure and …
symbioses that enhance plant growth and nutrition and influence ecosystem structure and …
Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi
The arrival of 454 sequencing represented a major breakthrough by allowing deeper
sequencing of environmental samples than was possible with existing Sanger approaches …
sequencing of environmental samples than was possible with existing Sanger approaches …
User‐friendly bioinformatics pipeline gDAT (graphical downstream analysis tool) for analysing rDNA sequences
High‐throughput sequencing (HTS) of multiple organisms in parallel (metabarcoding) has
become a routine and cost‐effective method for the analysis of microbial communities in …
become a routine and cost‐effective method for the analysis of microbial communities in …
[PDF][PDF] Developing a bioinformatics pipeline gDAT to analyse arbuscular mycorrhizal fungal communities using sequence data from different marker regions
M Vasar - 2020 - core.ac.uk
Arbuscular mycorrhizal (AM) fungi (Phylum Mucoromycota, Subphylum Glomeromycotina,
Spatafora et al. 2016) are widespread soil microorganisms that are obligate symbionts of the …
Spatafora et al. 2016) are widespread soil microorganisms that are obligate symbionts of the …
Navigating the labyrinth: a guide to sequence‐based, community ecology of arbuscular mycorrhizal fungi
Data generated from next generation sequencing (NGS) will soon comprise the majority of
information about arbuscular mycorrhizal fungal (AMF) communities. Although these …
information about arbuscular mycorrhizal fungal (AMF) communities. Although these …
Widespread polycistronic transcripts in mushroom-forming fungi revealed by single-molecule long-read mRNA sequencing
Genes in prokaryotic genomes are often arranged into clusters and co-transcribed into
polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some …
polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some …