Arbuscular mycorrhizal fungi throughout the year: using massively parallel pyrosequencing to quantify spatiotemporal seasonal dynamics

AJ Dumbrell - Molecular Microbial Ecology of the Rhizosphere, 2013 - Wiley Online Library
Arbuscular mycorrhizal (AM) fungi represent a ubiquitous functional component of terrestrial
ecosystems, playing central roles in nutrient cycling, with significant impacts on plant …

Exploring the transcriptome of mycorrhizal interactions

A Kohler, E Tisserant - Advances in Botanical Research, 2014 - Elsevier
The transcriptome is defined as the sum of all transcripts in a given cell, tissue or organ and
can be assessed by different approaches. The most recent ones, microarrays and RNA …

Development of bioinformatic tools to support EST-sequencing, in silico-and microarray-based transcriptome profiling in mycorrhizal symbioses

H Küster, A Becker, C Firnhaber, N Hohnjec… - Phytochemistry, 2007 - Elsevier
The great majority of terrestrial plants enters a beneficial arbuscular mycorrhiza (AM) or
ectomycorrhiza (ECM) symbiosis with soil fungi. In the SPP 1084 “MolMyk: Molecular Basics …

GlobalAMFungi: a global database of arbuscular mycorrhizal fungal occurrences from high‐throughput sequencing metabarcoding studies

T Větrovský, Z Kolaříková, C Lepinay… - New …, 2023 - Wiley Online Library
Arbuscular mycorrhizal (AM) fungi are crucial mutualistic symbionts of the majority of plant
species, with essential roles in plant nutrient uptake and stress mitigation. The importance of …

Evaluation of six primer pairs targeting the nuclear rRNA operon for characterization of arbuscular mycorrhizal fungal (AMF) communities using 454 pyrosequencing

M Van Geel, P Busschaert, O Honnay… - Journal of Microbiological …, 2014 - Elsevier
In the last few years, 454 pyrosequencing-based analysis of arbuscular mycorrhizal fungal
(AMF; Glomeromycota) communities has tremendously increased our knowledge of the …

The largest subunit of RNA polymerase II as a new marker gene to study assemblages of arbuscular mycorrhizal fungi in the field

H Stockinger, M Peyret-Guzzon, S Koegel… - PloS one, 2014 - journals.plos.org
Due to the potential of arbuscular mycorrhizal fungi (AMF, Glomeromycota) to improve plant
growth and soil quality, the influence of agricultural practice on their diversity continues to be …

Deep RNA sequencing improved the structural annotation of the Tuber melanosporum transcriptome

E Tisserant, C Da Silva, A Kohler, E Morin… - New …, 2011 - Wiley Online Library
The functional complexity of the Tuber melanosporum transcriptome has not yet been fully
elucidated. Here, we applied high‐throughput Illumina RNA‐sequencing (RNA‐Seq) to the …

In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies

M Montoliu-Nerin, M Sánchez-García… - Frontiers in fungal …, 2021 - frontiersin.org
Morphological characters and nuclear ribosomal DNA (rDNA) phylogenies have so far been
the basis of the current classifications of arbuscular mycorrhizal (AM) fungi. Improved …

Methods to estimate the proportion of plant and fungal RNA in an arbuscular mycorrhiza

IE Maldonado-Mendoza, GR Dewbre, ML Van Buuren… - Mycorrhiza, 2002 - Springer
Arbuscular mycorrhizas are endosymbiotic associations formed between obligately
biotrophic arbuscular mycorrhizal (AM) fungi and plant roots. The fungus and plant coexist in …

RNA-seq transcriptional profiling of an arbuscular mycorrhiza provides insights into regulated and coordinated gene expression in Lotus japonicus and Rhizophagus …

Y Handa, H Nishide, N Takeda, Y Suzuki… - Plant and Cell …, 2015 - academic.oup.com
Gene expression during arbuscular mycorrhizal development is highly orchestrated in both
plants and arbuscular mycorrhizal fungi. To elucidate the gene expression profiles of the …