Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing
Aspergillus oryzae, an important filamentous fungus used in food fermentation and the
enzyme industry, has been shown through genome sequencing and various other tools to …
enzyme industry, has been shown through genome sequencing and various other tools to …
Inside arbuscular mycorrhizal roots–molecular probes to understand the symbiosis
D Ruzicka, S Chamala, FH Barrios‐Masias… - The Plant …, 2013 - Wiley Online Library
Associations between arbuscular mycorrhizal (AM) fungi and plants are an ancient and
widespread plant microbe symbioses. Most land plants can associate with this specialized …
widespread plant microbe symbioses. Most land plants can associate with this specialized …
Prospects and challenges for fungal metatranscriptomics of complex communities
The ability to extract and purify messenger RNA directly from plants, decomposing organic
matter and soil, followed by high-throughput sequencing of the pool of expressed genes …
matter and soil, followed by high-throughput sequencing of the pool of expressed genes …
More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers?
Background High throughput sequencing has revolutionized microbial ecology. We now
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …
Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with P iloderma–P inus symbiosis: Improved methodologies for assessing gene …
Ectomycorrhizal (EM) fungi form symbiotic associations with plant roots that regulate nutrient
exchange between forest plants and soil. Environmental metagenomics approaches that …
exchange between forest plants and soil. Environmental metagenomics approaches that …
SeSaMe: metagenome sequence classification of arbuscular mycorrhizal fungi-associated microorganisms
J Eun Kang, A Ciampi, M Hijri - Genomics, Proteomics and …, 2020 - academic.oup.com
Arbuscular mycorrhizal fungi (AMF) are plant root symbionts that play key roles in plant
growth and soil fertility. They are obligate biotrophic fungi that form coenocytic …
growth and soil fertility. They are obligate biotrophic fungi that form coenocytic …
Laser microdissection unravels cell-type-specific transcription in arbuscular mycorrhizal roots, including CAAT-box transcription factor gene expression correlating …
C Hogekamp, D Arndt, PA Pereira, JD Becker… - Plant …, 2011 - academic.oup.com
Arbuscular mycorrhizae (AM) are the most widespread symbioses on Earth, promoting
nutrient supply of most terrestrial plant species. To unravel gene expression in defined …
nutrient supply of most terrestrial plant species. To unravel gene expression in defined …
The evolution of inter-genomic variation in arbuscular mycorrhizal fungi
E Boon - 2012 - papyrus.bib.umontreal.ca
Background: Arbuscular mycorrhizal fungi (AMF) are root-inhabiting fungi whose hyphal
networks form symbioses with plants. Previous studies have revealed extremely high levels …
networks form symbioses with plants. Previous studies have revealed extremely high levels …
Deep learning‐based quantification of arbuscular mycorrhizal fungi in plant roots
E Evangelisti, C Turner, A McDowell… - New …, 2021 - Wiley Online Library
Soil fungi establish mutualistic interactions with the roots of most vascular land plants.
Arbuscular mycorrhizal (AM) fungi are among the most extensively characterised …
Arbuscular mycorrhizal (AM) fungi are among the most extensively characterised …
RNA-seq analysis in forest tree species: bioinformatic problems and solutions
U Lopez de Heredia, JL Vázquez-Poletti - Tree Genetics & Genomes, 2016 - Springer
Direct sequencing of RNA (RNA-seq) using next-generation sequencing platforms has
allowed a growing number of gene expression studies focused on forest trees in the last 5 …
allowed a growing number of gene expression studies focused on forest trees in the last 5 …