Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing

B Wang, G Guo, C Wang, Y Lin, X Wang… - Nucleic acids …, 2010 - academic.oup.com
Aspergillus oryzae, an important filamentous fungus used in food fermentation and the
enzyme industry, has been shown through genome sequencing and various other tools to …

Inside arbuscular mycorrhizal roots–molecular probes to understand the symbiosis

D Ruzicka, S Chamala, FH Barrios‐Masias… - The Plant …, 2013 - Wiley Online Library
Associations between arbuscular mycorrhizal (AM) fungi and plants are an ancient and
widespread plant microbe symbioses. Most land plants can associate with this specialized …

Prospects and challenges for fungal metatranscriptomics of complex communities

CR Kuske, CN Hesse, JF Challacombe, D Cullen… - Fungal Ecology, 2015 - Elsevier
The ability to extract and purify messenger RNA directly from plants, decomposing organic
matter and soil, followed by high-throughput sequencing of the pool of expressed genes …

More bang for the buck? Can arbuscular mycorrhizal fungal communities be characterized adequately alongside other fungi using general fungal primers?

Y Lekberg, M Vasar, LS Bullington, SK Sepp… - New Phytologist, 2018 - JSTOR
Background High throughput sequencing has revolutionized microbial ecology. We now
have the ability to characterize both prokaryotic and eukaryotic microbial communities more …

Metatranscriptomic analysis of ectomycorrhizal roots reveals genes associated with P iloderma–P inus symbiosis: Improved methodologies for assessing gene …

HL Liao, Y Chen, TD Bruns, KG Peay… - Environmental …, 2014 - Wiley Online Library
Ectomycorrhizal (EM) fungi form symbiotic associations with plant roots that regulate nutrient
exchange between forest plants and soil. Environmental metagenomics approaches that …

SeSaMe: metagenome sequence classification of arbuscular mycorrhizal fungi-associated microorganisms

J Eun Kang, A Ciampi, M Hijri - Genomics, Proteomics and …, 2020 - academic.oup.com
Arbuscular mycorrhizal fungi (AMF) are plant root symbionts that play key roles in plant
growth and soil fertility. They are obligate biotrophic fungi that form coenocytic …

Laser microdissection unravels cell-type-specific transcription in arbuscular mycorrhizal roots, including CAAT-box transcription factor gene expression correlating …

C Hogekamp, D Arndt, PA Pereira, JD Becker… - Plant …, 2011 - academic.oup.com
Arbuscular mycorrhizae (AM) are the most widespread symbioses on Earth, promoting
nutrient supply of most terrestrial plant species. To unravel gene expression in defined …

The evolution of inter-genomic variation in arbuscular mycorrhizal fungi

E Boon - 2012 - papyrus.bib.umontreal.ca
Background: Arbuscular mycorrhizal fungi (AMF) are root-inhabiting fungi whose hyphal
networks form symbioses with plants. Previous studies have revealed extremely high levels …

Deep learning‐based quantification of arbuscular mycorrhizal fungi in plant roots

E Evangelisti, C Turner, A McDowell… - New …, 2021 - Wiley Online Library
Soil fungi establish mutualistic interactions with the roots of most vascular land plants.
Arbuscular mycorrhizal (AM) fungi are among the most extensively characterised …

RNA-seq analysis in forest tree species: bioinformatic problems and solutions

U Lopez de Heredia, JL Vázquez-Poletti - Tree Genetics & Genomes, 2016 - Springer
Direct sequencing of RNA (RNA-seq) using next-generation sequencing platforms has
allowed a growing number of gene expression studies focused on forest trees in the last 5 …