FESIN workshops at ESA—the mycelial network grows
The first large public meeting of the Fungal Environmental Sampling and Informatics
Network (FESIN: http://www. bio. utk. edu/fesin/title. htm) took place at the Ecological Society …
Network (FESIN: http://www. bio. utk. edu/fesin/title. htm) took place at the Ecological Society …
Using mock communities of arbuscular mycorrhizal fungi to evaluate fidelity associated with Illumina sequencing
Abstract Characterization of arbuscular mycorrhizal (AM) fungal communities increasingly
relies on high throughput sequencing (HTS) datasets, but whether sequence data accurately …
relies on high throughput sequencing (HTS) datasets, but whether sequence data accurately …
Real-time PCR and microscopy: are the two methods measuring the same unit of arbuscular mycorrhizal fungal abundance?
To enable quantification of mycelial abundance in mixed-species environments, eight new
TaqMan® real-time PCR assays were developed for five arbuscular mycorrhizal fungal …
TaqMan® real-time PCR assays were developed for five arbuscular mycorrhizal fungal …
Purifying Selection and Persistent Polymorphism among Nuclei in the Multinucleate Arbuscular Mycorrhizal (AM) Fungi
D Manyara, M Sánchez-García, MH Thorén… - bioRxiv, 2023 - biorxiv.org
Arbuscular mycorrhizal (AM) fungi form obligate symbiosis with the roots of the majority of
land plants and are found in all terrestrial ecosystems. The source and structure of genetic …
land plants and are found in all terrestrial ecosystems. The source and structure of genetic …
RNA-Seq for transcriptome analysis in non-model plants
Sequencing of mRNA using next-generation sequencing (NGS) technologies (RNA-seq)
has the potential to reveal unprecedented complexity of the transcriptomes. The …
has the potential to reveal unprecedented complexity of the transcriptomes. The …
[HTML][HTML] Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome
PE Larsen, A Sreedasyam, G Trivedi, GK Podila… - BMC Systems …, 2011 - Springer
Background Mycorrhizae, symbiotic interactions between soil fungi and tree roots, are
ubiquitous in terrestrial ecosystems. The fungi contribute phosphorous, nitrogen and …
ubiquitous in terrestrial ecosystems. The fungi contribute phosphorous, nitrogen and …
Gene expression in Rhizoglomus irregulare at two different time points of mycorrhiza establishment in Helianthus annuus roots, as revealed by RNA-seq analysis
Arbuscular mycorrhizal fungi (AMF) play a fundamental role in plant growth and nutrition in
natural and agricultural ecosystems. Despite the importance of such symbionts, the different …
natural and agricultural ecosystems. Despite the importance of such symbionts, the different …
RNA‐Seq Data Analysis: A Practical Guide for Model and Non‐Model Organisms
E Pola‐Sánchez, KM Hernández‐Martínez… - Current …, 2024 - Wiley Online Library
RNA sequencing (RNA‐seq) has emerged as a powerful tool for assessing genome‐wide
gene expression, revolutionizing various fields of biology. However, analyzing large RNA …
gene expression, revolutionizing various fields of biology. However, analyzing large RNA …
Dual RNA-seq reveals large-scale non-conserved genotype× genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis
ID Mateus, FG Masclaux, C Aletti, EC Rojas… - The ISME …, 2019 - academic.oup.com
Arbuscular mycorrhizal fungi (AMF) impact plant growth and are a major driver of plant
diversity and productivity. We quantified the contribution of intra-specific genetic variability in …
diversity and productivity. We quantified the contribution of intra-specific genetic variability in …
Analysis of arbuscular mycorrhizal fungi (AMF) community composition associated with alkaline saline sodic soils
N Marquez, JM Irazoqui, MB Ciacci, AF Amadio… - bioRxiv, 2024 - biorxiv.org
Marginal soils affected by salinity, sodicity and alkalinity decrease crop productivity. In this
context, a viable alternative strategy lies in the remediation of degraded lands using …
context, a viable alternative strategy lies in the remediation of degraded lands using …