FESIN workshops at ESA—the mycelial network grows

TR Horton, AE Arnold, TD Bruns - 2009 - Springer
The first large public meeting of the Fungal Environmental Sampling and Informatics
Network (FESIN: http://www. bio. utk. edu/fesin/title. htm) took place at the Ecological Society …

Using mock communities of arbuscular mycorrhizal fungi to evaluate fidelity associated with Illumina sequencing

CP Egan, A Rummel, V Kokkoris, J Klironomos… - Fungal Ecology, 2018 - Elsevier
Abstract Characterization of arbuscular mycorrhizal (AM) fungal communities increasingly
relies on high throughput sequencing (HTS) datasets, but whether sequence data accurately …

Real-time PCR and microscopy: are the two methods measuring the same unit of arbuscular mycorrhizal fungal abundance?

HA Gamper, JPW Young, DL Jones, A Hodge - Fungal genetics and biology, 2008 - Elsevier
To enable quantification of mycelial abundance in mixed-species environments, eight new
TaqMan® real-time PCR assays were developed for five arbuscular mycorrhizal fungal …

Purifying Selection and Persistent Polymorphism among Nuclei in the Multinucleate Arbuscular Mycorrhizal (AM) Fungi

D Manyara, M Sánchez-García, MH Thorén… - bioRxiv, 2023 - biorxiv.org
Arbuscular mycorrhizal (AM) fungi form obligate symbiosis with the roots of the majority of
land plants and are found in all terrestrial ecosystems. The source and structure of genetic …

RNA-Seq for transcriptome analysis in non-model plants

R Garg, M Jain - Legume Genomics: Methods and Protocols, 2013 - Springer
Sequencing of mRNA using next-generation sequencing (NGS) technologies (RNA-seq)
has the potential to reveal unprecedented complexity of the transcriptomes. The …

[HTML][HTML] Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome

PE Larsen, A Sreedasyam, G Trivedi, GK Podila… - BMC Systems …, 2011 - Springer
Background Mycorrhizae, symbiotic interactions between soil fungi and tree roots, are
ubiquitous in terrestrial ecosystems. The fungi contribute phosphorous, nitrogen and …

Gene expression in Rhizoglomus irregulare at two different time points of mycorrhiza establishment in Helianthus annuus roots, as revealed by RNA-seq analysis

A Vangelisti, A Turrini, C Sbrana, L Avio, T Giordani… - Mycorrhiza, 2020 - Springer
Arbuscular mycorrhizal fungi (AMF) play a fundamental role in plant growth and nutrition in
natural and agricultural ecosystems. Despite the importance of such symbionts, the different …

RNA‐Seq Data Analysis: A Practical Guide for Model and Non‐Model Organisms

E Pola‐Sánchez, KM Hernández‐Martínez… - Current …, 2024 - Wiley Online Library
RNA sequencing (RNA‐seq) has emerged as a powerful tool for assessing genome‐wide
gene expression, revolutionizing various fields of biology. However, analyzing large RNA …

Dual RNA-seq reveals large-scale non-conserved genotype× genotype-specific genetic reprograming and molecular crosstalk in the mycorrhizal symbiosis

ID Mateus, FG Masclaux, C Aletti, EC Rojas… - The ISME …, 2019 - academic.oup.com
Arbuscular mycorrhizal fungi (AMF) impact plant growth and are a major driver of plant
diversity and productivity. We quantified the contribution of intra-specific genetic variability in …

Analysis of arbuscular mycorrhizal fungi (AMF) community composition associated with alkaline saline sodic soils

N Marquez, JM Irazoqui, MB Ciacci, AF Amadio… - bioRxiv, 2024 - biorxiv.org
Marginal soils affected by salinity, sodicity and alkalinity decrease crop productivity. In this
context, a viable alternative strategy lies in the remediation of degraded lands using …