Integrating statistical genetic and geospatial methods brings new power to phylogeography
The field of phylogeography continues to grow in terms of power and accessibility. Initially
uniting population genetics and phylogenetics, it now spans disciplines as diverse as …
uniting population genetics and phylogenetics, it now spans disciplines as diverse as …
A practical guide to design and assess a phylogenomic study
J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
Statistical phylogeography
LL Knowles - Annual Review of Ecology, Evolution, and …, 2009 - annualreviews.org
Phylogeography's objective—to understand the processes underlying the spatial and
temporal dimensions of genetic variation—underlies both the prominence and extensive …
temporal dimensions of genetic variation—underlies both the prominence and extensive …
Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses
CL Richards, BC Carstens… - Journal of …, 2007 - Wiley Online Library
Statistical phylogeographic studies contribute to our understanding of the factors that
influence population divergence and speciation, and that ultimately generate …
influence population divergence and speciation, and that ultimately generate …
Toward a paradigm shift in comparative phylogeography driven by trait-based hypotheses
A Papadopoulou, LL Knowles - Proceedings of the …, 2016 - National Acad Sciences
For three decades, comparative phylogeography has conceptually and methodologically
relied on the concordance criterion for providing insights into the historical/biogeographic …
relied on the concordance criterion for providing insights into the historical/biogeographic …
Conserved genes, sampling error, and phylogenomic inference
Disagreement or conflict among phylogenetic hypotheses obtained by analysis of large,
genomewide data sets has incited debate over potential benefits, pitfalls, and best practices …
genomewide data sets has incited debate over potential benefits, pitfalls, and best practices …
The burgeoning field of statistical phylogeography
LL Knowles - Journal of evolutionary biology, 2004 - academic.oup.com
In the newly emerging field of statistical phylogeography, consideration of the stochastic
nature of genetic processes and explicit reference to theoretical expectations under various …
nature of genetic processes and explicit reference to theoretical expectations under various …
To what extent current limits of phylogenomics can be overcome?
Current phylogenomic methods are still a long way from implementing a realistic genome
evolution model. An ideal approach would require a general joint analysis of genomic …
evolution model. An ideal approach would require a general joint analysis of genomic …
Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere
LB Beheregaray - Molecular Ecology, 2008 - Wiley Online Library
Phylogeography is a young, vigorous and integrative field of study that uses genetic data to
understand the history of populations. This field has recently expanded into many areas of …
understand the history of populations. This field has recently expanded into many areas of …
Statistics and truth in phylogenomics
Phylogenomics refers to the inference of historical relationships among species using
genome-scale sequence data and to the use of phylogenetic analysis to infer protein …
genome-scale sequence data and to the use of phylogenetic analysis to infer protein …