Identification of RNA recognition elements in the Saccharomyces cerevisiae transcriptome
DP Riordan, D Herschlag, PO Brown - Nucleic acids research, 2011 - academic.oup.com
Post-transcriptional regulation of gene expression, including mRNA localization, translation
and decay, is ubiquitous yet still largely unexplored. How is the post-transcriptional …
and decay, is ubiquitous yet still largely unexplored. How is the post-transcriptional …
[HTML][HTML] Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
DJ Hogan, DP Riordan, AP Gerber, D Herschlag… - PLoS …, 2008 - journals.plos.org
RNA-binding proteins (RBPs) have roles in the regulation of many post-transcriptional steps
in gene expression, but relatively few RBPs have been systematically studied. We searched …
in gene expression, but relatively few RBPs have been systematically studied. We searched …
[HTML][HTML] Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae
The vast landscape of RNA-protein interactions at the heart of post-transcriptional regulation
remains largely unexplored. Indeed it is likely that, even in yeast, a substantial fraction of the …
remains largely unexplored. Indeed it is likely that, even in yeast, a substantial fraction of the …
[HTML][HTML] A screen for RNA-binding proteins in yeast indicates dual functions for many enzymes
Hundreds of RNA-binding proteins (RBPs) control diverse aspects of post-transcriptional
gene regulation. To identify novel and unconventional RBPs, we probed high-density …
gene regulation. To identify novel and unconventional RBPs, we probed high-density …
In silico characterization and prediction of global protein–mRNA interactions in yeast
V Pancaldi, J Bähler - Nucleic acids research, 2011 - academic.oup.com
Post-transcriptional gene regulation is mediated through complex networks of protein–RNA
interactions. The targets of only a few RNA binding proteins (RBPs) are known, even in the …
interactions. The targets of only a few RNA binding proteins (RBPs) are known, even in the …
[HTML][HTML] Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae
Background Protein-RNA interactions are integral components of nearly every aspect of
biology, including regulation of gene expression, assembly of cellular architectures, and …
biology, including regulation of gene expression, assembly of cellular architectures, and …
Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae
A Jambhekar, K McDermott, K Sorber… - Proceedings of the …, 2005 - National Acad Sciences
Cytoplasmic mRNA localization is a mechanism used by many organisms to generate
asymmetry and sequester protein activity. In the yeast Saccharomyces cerevisiae, mRNA …
asymmetry and sequester protein activity. In the yeast Saccharomyces cerevisiae, mRNA …
Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks
In eukaryotic organisms, gene expression requires an additional level of coordination that
links transcriptional and posttranslational processes. Messenger RNAs have traditionally …
links transcriptional and posttranslational processes. Messenger RNAs have traditionally …
Discovering structural cis‐regulatory elements by modeling the behaviors of mRNAs
BC Foat, GD Stormo - Molecular systems biology, 2009 - embopress.org
Gene expression is regulated at each step from chromatin remodeling through translation
and degradation. Several known RNA‐binding regulatory proteins interact with specific RNA …
and degradation. Several known RNA‐binding regulatory proteins interact with specific RNA …
[HTML][HTML] Translation factor and RNA binding protein mRNA interactomes support broader RNA regulons for posttranscriptional control
The regulation of translation provides a rapid and direct mechanism to modulate the cellular
proteome. In eukaryotes, an established model for the recruitment of ribosomes to mRNA …
proteome. In eukaryotes, an established model for the recruitment of ribosomes to mRNA …