APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins
M Sharan, KU Förstner, A Eulalio… - Nucleic acids …, 2017 - academic.oup.com
RNA-binding proteins (RBPs) have been established as core components of several post-
transcriptional gene regulation mechanisms. Experimental techniques such as cross-linking …
transcriptional gene regulation mechanisms. Experimental techniques such as cross-linking …
Quantitative proteomic analysis reveals concurrent RNA–protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae
A growing body of evidence supports the existence of an extensive network of RNA-binding
proteins (RBPs) whose combinatorial binding affects the post-transcriptional fate of every …
proteins (RBPs) whose combinatorial binding affects the post-transcriptional fate of every …
Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
AP Gerber, D Herschlag, PO Brown - PLoS biology, 2004 - journals.plos.org
Genes encoding RNA-binding proteins are diverse and abundant in eukaryotic genomes.
Although some have been shown to have roles in post-transcriptional regulation of the …
Although some have been shown to have roles in post-transcriptional regulation of the …
Multifunctional RNA-binding proteins influence mRNA abundance and translational efficiency of distinct sets of target genes
V Schneider-Lunitz, J Ruiz-Orera… - PLoS Computational …, 2021 - journals.plos.org
RNA-binding proteins (RBPs) can regulate more than a single aspect of RNA metabolism.
We searched for such previously undiscovered multifunctionality within a set of 143 RBPs …
We searched for such previously undiscovered multifunctionality within a set of 143 RBPs …
Systems perspectives on mRNA processing
AE McKee, PA Silver - Cell research, 2007 - nature.com
The application of genomic technologies to the study of mRNA processing is increasingly
conducted in metazoan organisms in order to understand the complex events that occur …
conducted in metazoan organisms in order to understand the complex events that occur …
A catalog of stability-associated sequence elements in 3'UTRs of yeast mRNAs
Background In recent years, intensive computational efforts have been directed towards the
discovery of promoter motifs that correlate with mRNA expression profiles. Nevertheless, it is …
discovery of promoter motifs that correlate with mRNA expression profiles. Nevertheless, it is …
Global analysis of yeast mRNPs
Proteins regulate gene expression by controlling mRNA biogenesis, localization, translation
and decay. Identifying the composition, diversity and function of mRNA–protein complexes …
and decay. Identifying the composition, diversity and function of mRNA–protein complexes …
Profiling condition-specific, genome-wide regulation of mRNA stability in yeast
BC Foat, SS Houshmandi, WM Olivas… - Proceedings of the …, 2005 - National Acad Sciences
The steady-state abundance of an mRNA is determined by the balance between
transcription and decay. Although regulation of transcription has been well studied both …
transcription and decay. Although regulation of transcription has been well studied both …
RNA regulons: coordination of post-transcriptional events
JD Keene - Nature Reviews Genetics, 2007 - nature.com
Recent findings demonstrate that multiple mRNAs are co-regulated by one or more
sequence-specific RNA-binding proteins that orchestrate their splicing, export, stability …
sequence-specific RNA-binding proteins that orchestrate their splicing, export, stability …
Conserved mRNA-binding proteomes in eukaryotic organisms
AM Matia-González, EE Laing, AP Gerber - Nature structural & …, 2015 - nature.com
RNA-binding proteins (RBPs) are essential for post-transcriptional regulation of gene
expression. Recent high-throughput screens have dramatically increased the number of …
expression. Recent high-throughput screens have dramatically increased the number of …