Protein–RNA interactions: new genomic technologies and perspectives
RNA-binding proteins are key players in the regulation of gene expression. In this Progress
article, we discuss state-of-the-art technologies that can be used to study individual RNA …
article, we discuss state-of-the-art technologies that can be used to study individual RNA …
Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays
SA Tenenbaum, PJ Lager, CC Carson, JD Keene - Methods, 2002 - Elsevier
Although in vitro methods have been used to identify putative targets of mRNA-binding
proteins, direct in vivo methods are needed to identify endogenously associated mRNAs …
proteins, direct in vivo methods are needed to identify endogenously associated mRNAs …
RNA localization signals: deciphering the message with bioinformatics
RS Hamilton, I Davis - Seminars in cell & developmental biology, 2007 - Elsevier
mRNA localization is an important posttranscriptional method of targeting proteins to their
site of function. The sorting of transcripts to their correct intracellular destination is achieved …
site of function. The sorting of transcripts to their correct intracellular destination is achieved …
RBPmap: a web server for mapping binding sites of RNA-binding proteins
Regulation of gene expression is executed in many cases by RNA-binding proteins (RBPs)
that bind to mRNAs as well as to non-coding RNAs. RBPs recognize their RNA target via …
that bind to mRNAs as well as to non-coding RNAs. RBPs recognize their RNA target via …
RNA-centric approaches to study RNA-protein interactions in vitro and in silico
Given their central role in translation, splicing, localization and stability of transcripts, RNA
binding proteins (RBPs) are key regulators of several cellular processes. While experimental …
binding proteins (RBPs) are key regulators of several cellular processes. While experimental …
Circuitry of mRNA regulation
A Kanitz, AP Gerber - Wiley Interdisciplinary Reviews: Systems …, 2010 - Wiley Online Library
Some of the classical paradigms of gene regulation have been challenged by global‐scale
analysis of eukaryotic transcriptional and post‐transcriptional gene regulation (PTGR), made …
analysis of eukaryotic transcriptional and post‐transcriptional gene regulation (PTGR), made …
Experimental and computational considerations in the study of RNA-binding protein-RNA interactions
After an RNA is transcribed, it undergoes a variety of processing steps that can change the
encoded protein sequence (through alternative splicing and RNA editing), regulate the …
encoded protein sequence (through alternative splicing and RNA editing), regulate the …
Towards deciphering the principles underlying an mRNA recognition code
A Serganov, DJ Patel - Current opinion in structural biology, 2008 - Elsevier
Messenger RNAs interact with a number of different molecules that determine the fate of
each transcript and contribute to the overall pattern of gene expression. These interactions …
each transcript and contribute to the overall pattern of gene expression. These interactions …
New sequencing methodologies reveal interplay between multiple RNA-binding proteins and their RNAs
S Melamed - Current genetics, 2020 - Springer
It is now established that base-pairing regulatory RNAs are key players in post-
transcriptional regulatory networks where they affect the translation and/or stability of their …
transcriptional regulatory networks where they affect the translation and/or stability of their …
Structural and functional features of eukaryotic mRNA untranslated regions
The crucial role of the non-coding portion of genomes is now widely acknowledged. In
particular, mRNA untranslated regions are involved in many post-transcriptional regulatory …
particular, mRNA untranslated regions are involved in many post-transcriptional regulatory …