Stem–loop RNA labeling can affect nuclear and cytoplasmic mRNA processing
S Heinrich, CL Sidler, CM Azzalin, K Weis - Rna, 2017 - rnajournal.cshlp.org
The binding of sequence-specific RNA-interacting proteins, such as the bacteriophage MS2
or PP7 coat proteins, to their corresponding target sequences has been extremely useful …
or PP7 coat proteins, to their corresponding target sequences has been extremely useful …
Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA
Allele-specific protein-RNA binding is an essential aspect that may reveal functional genetic
variants (GVs) mediating post-transcriptional regulation. Recently, genome-wide detection of …
variants (GVs) mediating post-transcriptional regulation. Recently, genome-wide detection of …
Cross-linking, ligation, and sequencing of hybrids reveals RNA–RNA interactions in yeast
G Kudla, S Granneman, D Hahn… - Proceedings of the …, 2011 - National Acad Sciences
Many protein–protein and protein–nucleic acid interactions have been experimentally
characterized, whereas RNA–RNA interactions have generally only been predicted …
characterized, whereas RNA–RNA interactions have generally only been predicted …
Identifying eIF4E-binding protein translationally-controlled transcripts reveals links to mRNAs bound by specific PUF proteins
AG Cridge, LM Castelli, JB Smirnova… - Nucleic acids …, 2010 - academic.oup.com
Abstract eIF4E-binding proteins (4E-BPs) regulate translation of mRNAs in eukaryotes.
However the extent to which specific mRNA targets are regulated by 4E-BPs remains …
However the extent to which specific mRNA targets are regulated by 4E-BPs remains …
Coding region: the neglected post-transcriptional code
EK Lee, M Gorospe - RNA biology, 2011 - Taylor & Francis
The control of mammalian mRNA turnover and translation has been linked almost
exclusively to specific cis-elements within the 5'-and 3'-untranslated regions (UTRs) of the …
exclusively to specific cis-elements within the 5'-and 3'-untranslated regions (UTRs) of the …
A genomic integration method for the simultaneous visualization of endogenous mRNAs and their translation products in living yeast
Protein localization within cells can be achieved by the targeting and localized translation of
mRNA. Yet, our understanding of the dynamics of mRNA targeting and protein localization …
mRNA. Yet, our understanding of the dynamics of mRNA targeting and protein localization …
Functional interchangeability of the structurally similar tetranucleotide loops GAAA and UUCG in fission yeast signal recognition particle RNA.
D Selinger, X Liao, JA Wise - Proceedings of the National …, 1993 - National Acad Sciences
Signal recognition particle (SRP) RNA exhibits significant primary sequence conservation
only in domain IV, a bulged hairpin capped by a GNRA (N, any nucleotide; R, purine) …
only in domain IV, a bulged hairpin capped by a GNRA (N, any nucleotide; R, purine) …
Probing RNA–protein networks: biochemistry meets genomics
ZT Campbell, M Wickens - Trends in biochemical sciences, 2015 - cell.com
RNA–protein interactions are pervasive. The specificity of these interactions dictates which
RNAs are controlled by what protein. Here we describe a class of revolutionary new …
RNAs are controlled by what protein. Here we describe a class of revolutionary new …
Beyond reader proteins: RNA binding proteins and RNA modifications in conversation to regulate gene expression
C Fagre, W Gilbert - Wiley Interdisciplinary Reviews: RNA, 2024 - Wiley Online Library
Post‐transcriptional mRNA modifications play diverse roles in gene expression and RNA
function. In many cases, RNA modifications function by altering how cellular machinery such …
function. In many cases, RNA modifications function by altering how cellular machinery such …
Deciphering the mRNP code: RNA-bound determinants of post-transcriptional gene regulation
NH Gehring, E Wahle, U Fischer - Trends in biochemical sciences, 2017 - cell.com
Eukaryotic cells determine the final protein output of their genetic program not only by
controlling transcription but also by regulating the localization, translation and turnover rates …
controlling transcription but also by regulating the localization, translation and turnover rates …