Phylogenomic conflict resulting from ancient introgression following species diversification in Stewartia sl (Theaceae)

HY Lin, YJ Hao, JH Li, CX Fu, PS Soltis… - Molecular Phylogenetics …, 2019 - Elsevier
Phylogenetic analyses using diverse datasets can yield conflicting inference of evolutionary
history. Phylogenetic conflicts observed in both animal and plant systems have often been …

Circumscription and biogeographic patterns in the Eastern North American-East Asian genus Stewartia (Theaceae: Stewartieae): insight from chloroplast and nuclear …

LM Prince - Castanea, 2002 - JSTOR
Stewartia is a genus of approximately 26 species which are frequently divided into two
subgenera or genera based on the leaf duration. All evergreen species (= Hartia) are found …

Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication

Q Zhang, L Zhao, RA Folk, JL Zhao… - Annals of …, 2022 - academic.oup.com
Abstract Background and Aims Theaceae, with three tribes, nine genera and more than 200
species, are of great economic and ecological importance. Recent phylogenetic analyses …

Phytogeographic history of the tea family inferred through high-resolution phylogeny and fossils

Y Yan, CC Davis, D Dimitrov, Z Wang… - Systematic …, 2021 - academic.oup.com
The tea family (Theaceae) has a highly unusual amphi-Pacific disjunct distribution: most
extant species in the family are restricted to subtropical evergreen broadleaf forests in East …

[HTML][HTML] Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants

SA Smith, MJ Moore, JW Brown, Y Yang - BMC evolutionary biology, 2015 - Springer
Background The use of transcriptomic and genomic datasets for phylogenetic reconstruction
has become increasingly common as researchers attempt to resolve recalcitrant nodes with …

Disentangling sources of gene tree discordance in phylogenomic data sets: testing ancient hybridizations in Amaranthaceae sl

DF Morales-Briones, G Kadereit, DT Tefarikis… - Systematic …, 2021 - academic.oup.com
Gene tree discordance in large genomic data sets can be caused by evolutionary processes
such as incomplete lineage sorting and hybridization, as well as model violation, and errors …

A consensus phylogenomic approach highlights paleopolyploid and rapid radiation in the history of Ericales

DA Larson, JF Walker, OM Vargas… - American Journal of …, 2020 - Wiley Online Library
Premise Large genomic data sets offer the promise of resolving historically recalcitrant
species relationships. However, different methodologies can yield conflicting results …

Artifactual orthologs and the need for diligent data exploration in complex phylogenomic datasets: a museomic case study from the Andean flora

LA Frost, AM Bedoya, LP Lagomarsino - Systematic Biology, 2024 - academic.oup.com
The Andes mountains of western South America are a globally important biodiversity
hotspot, yet there is a paucity of resolved phylogenies for plant clades from this region …

Integrating coalescent‐based species delimitation with ecological niche modeling delimited two species within the Stewartia sinensis complex (Theaceae)

HY Lin, KJ Gu, WH Li, YP Zhao - Journal of Systematics and …, 2022 - Wiley Online Library
Accurate species delimitation is the key to precise estimation of species diversity and is
fundamental to most branches of biology. Unclear species boundaries within species …

Phylogenomic insights into the temporal-spatial divergence history, evolution of leaf habit and hybridization in Stachyurus (Stachyuraceae)

Y Feng, HP Comes, YX Qiu - Molecular phylogenetics and evolution, 2020 - Elsevier
Abstract Stachyuraceae, an East Asian endemic family of shrubs or small trees, comprises a
single genus, Stachyurus (c. 11 spp.). Despite previous extensive studies based on both …