Bayesian total-evidence dating revisits sloth phylogeny and biogeography: a cautionary tale on morphological clock analyses

JV Tejada, PO Antoine, P Münch, G Billet… - Systematic …, 2024 - academic.oup.com
Combining morphological and molecular characters through Bayesian total-evidence dating
allows inferring the phylogenetic and timescale framework of both extant and fossil taxa …

Phylogeny, macroevolutionary trends and historical biogeography of sloths: insights from a Bayesian morphological clock analysis

L Varela, PS Tambusso, HG McDonald… - Systematic …, 2019 - academic.oup.com
Sloths, like other xenarthrans, are an extremely interesting group of mammals that, after a
long history of evolution and diversification in South America, became established on …

Reassessing the phylogeny and divergence times of sloths (Mammalia: Pilosa: Folivora), exploring alternative morphological partitioning and dating models

DM Casali, A Boscaini, TJ Gaudin… - Zoological Journal of …, 2022 - academic.oup.com
Phylogenetic relationships among sloths (Folivora) have been extensively studied in the
past few decades using maximum parsimony approaches. Recently, Bayesian phylogenetic …

Multiple morphological clocks and total-evidence tip-dating in mammals

MSY Lee - Biology Letters, 2016 - royalsocietypublishing.org
Morphological integration predicts that correlated characters will coevolve; thus, each
distinct suite of correlated characters might be expected to evolve according to a separate …

Bayesian tip-dated phylogenetics: topological effects, stratigraphic fit and the early evolution of mammals

B King, R Beck - bioRxiv, 2019 - biorxiv.org
The incorporation of stratigraphic data into phylogenetic analysis has a long history of
debate, but is not currently standard practice for palaeontologists. Bayesian tip-dating (or …

Bayesian tip-dated phylogenetics in paleontology: topological effects and stratigraphic fit

B King - Systematic Biology, 2021 - academic.oup.com
The incorporation of stratigraphic data into phylogenetic analysis has a long history of
debate but is not currently standard practice for paleontologists. Bayesian tip-dated (or …

[HTML][HTML] Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

TR Simões, MW Caldwell, SE Pierce - BMC biology, 2020 - Springer
Background The vast majority of all life that ever existed on earth is now extinct and several
aspects of their evolutionary history can only be assessed by using morphological data from …

An In Silico Comparison of Protocols for Dated Phylogenomics

RA Collins, T Hrbek - Systematic Biology, 2018 - academic.oup.com
In the age of genome-scale DNA sequencing, choice of molecular marker arguably remains
an important decision in planning a phylogenetic study. Using published genomes from 23 …

Dynamic biogeographic models and dinosaur origins

SY Michael, MG Baron, DB Norman… - Earth and Environmental …, 2018 - cambridge.org
A comprehensive analysis of early dinosaur relationships raised the possibility that the
group may have originated in Laurasia (Northern Hemisphere), rather than Gondwana …

EvoPhylo: An r package for pre‐ and postprocessing of morphological data from relaxed clock Bayesian phylogenetics

TR Simões, N Greifer, J Barido‐Sottani… - Methods in Ecology …, 2023 - Wiley Online Library
Relaxed clock Bayesian evolutionary inference (BEI) enables the co‐estimation of
phylogenetic trees and evolutionary parameters associated with models of character and …