Genome wide annotation and characterization of young, intact long terminal repeat retrotransposons (In-LTR-RTs) of seven legume species

PK Jayaswal, A Shanker, NK Singh - Genetica, 2020 - Springer
Availability of genome sequence of different legume species has provided an opportunity to
characterize the abundance, distribution, and divergence of canonical intact long terminal …

A comprehensive annotation dataset of intact LTR retrotransposons of 300 plant genomes

SS Zhou, XM Yan, KF Zhang, H Liu, J Xu, S Nie, KH Jia… - Scientific Data, 2021 - nature.com
LTR retrotransposons (LTR-RTs) are ubiquitous and represent the dominant repeat element
in plant genomes, playing important roles in functional variation, genome plasticity and …

LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice

H Wang, JS Liu - BMC genomics, 2008 - Springer
Background Long terminal repeat retrotransposons (LTR elements) are ubiquitous
Eukaryotic TEs that transpose through RNA intermediates. Accounting for significant …

LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice.

WH Wang Hao, LJS Liu JinSong - 2008 - cabidigitallibrary.org
Background: Long terminal repeat retrotransposons (LTR elements) are ubiquitous
Eukaryotic TEs that transpose through RNA intermediates. Accounting for significant …

High nucleotide similarity of three Copia lineage LTR retrotransposons among plant genomes

S Orozco-Arias, M Dupeyron, D Gutiérrez-Duque… - …, 2023 - cdnsciencepub.com
Transposable elements (TEs) are mobile elements found in the majority of eukaryotic
genomes. TEs deeply impact the structure and evolution of chromosomes and can induce …

Genome-wide survey and comparative analysis of LTR retrotransposons and their captured genes in rice and sorghum

SY Jiang, S Ramachandran - PLoS One, 2013 - journals.plos.org
Long terminal repeat (LTR) retrotransposons are the major class I mobile elements in plants.
They play crucial roles in gene expansion, diversification and evolution. However, their …

Long terminal repeat retrotransposons of Oryza sativa

EM McCarthy, J Liu, G Lizhi, JF McDonald - Genome biology, 2002 - Springer
Background Long terminal repeat (LTR) retrotransposons constitute a major fraction of the
genomes of higher plants. For example, retrotransposons comprise more than 50% of the …

LTRtype, an efficient tool to characterize structurally complex LTR retrotransposons and nested insertions on genomes

FC Zeng, YJ Zhao, QJ Zhang, LZ Gao - Frontiers in plant science, 2017 - frontiersin.org
The amplification and recombination of long terminal repeat (LTR) retrotransposons have
proven to determine the size, organization, function, and evolution of most host genomes …

Obtaining retrotransposon sequences, analysis of their genomic distribution and use of retrotransposon-derived genetic markers in lentil (Lens culinaris Medik.)

R Rey-Banos, LE Saenz de Miera, P Garcia… - PloS one, 2017 - journals.plos.org
Retrotransposons with long terminal repeats (LTR-RTs) are widespread mobile elements in
eukaryotic genomes. We obtained a total of 81 partial LTR-RT sequences from lentil …

Look4LTRs: a Long terminal repeat retrotransposon detection tool capable of cross species studies and discovering recently nested repeats

AB Garza, E Lerat, HZ Girgis - Mobile DNA, 2024 - Springer
Plant genomes include large numbers of transposable elements. One particular type of
these elements is flanked by two Long Terminal Repeats (LTRs) and can translocate using …