Phylogenetic analysis based on single-copy orthologous proteins in highly variable chloroplast genomes of Corydalis

X Yin, F Huang, X Liu, J Guo, N Cui, C Liang, Y Lian… - Scientific Reports, 2022 - nature.com
Corydalis is one of the few lineages that have been reported to have extensive large-scale
chloroplast genome (cp-genome) rearrangements. In this study, novel cp-genome …

The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae)

PG Wolf, KG Karol, DF Mandoli, J Kuehl… - Gene, 2005 - Elsevier
We used a unique combination of techniques to sequence the first complete chloroplast
genome of a lycophyte, Huperzia lucidula. This plant belongs to a significant clade …

Insights into chloroplast genome evolution across Opuntioideae (Cactaceae) reveals robust yet sometimes conflicting phylogenetic topologies

M Köhler, M Reginato, TT Souza-Chies… - Frontiers in Plant …, 2020 - frontiersin.org
Chloroplast genomes (plastomes) are frequently treated as highly conserved among land
plants. However, many lineages of vascular plants have experienced extensive structural …

The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and …

X Yi, L Gao, B Wang, YJ Su… - Genome biology and …, 2013 - academic.oup.com
We have determined the complete chloroplast (cp) genome sequence of Cephalotaxus
oliveri. The genome is 134,337 bp in length, encodes 113 genes, and lacks inverted repeat …

The complete chloroplast genomes of three Hamamelidaceae species: Comparative and phylogenetic analyses

NJ Wang, SF Chen, L Xie, L Wang… - Ecology and …, 2022 - Wiley Online Library
Hamamelidaceae is an important group that represents the origin and early evolution of
angiosperms. Its plants have many uses, such as timber, medical, spice, and ornamental …

Comparative chloroplast genomics of Dipsacales species: insights into sequence variation, adaptive evolution, and phylogenetic relationships

WB Fan, Y Wu, J Yang, K Shahzad, ZH Li - Frontiers in Plant Science, 2018 - frontiersin.org
In general, the chloroplast genomes of angiosperms are considered to be highly conserved
and affected little by adaptive evolution. In this study, we tested this hypothesis based on …

Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus …

DR Hansen, SG Dastidar, Z Cai, C Penaflor… - Molecular Phylogenetics …, 2007 - Elsevier
We have determined the complete chloroplast genome sequences of four early-diverging
lineages of angiosperms, Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea …

The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses

JK Saina, AW Gichira, ZZ Li, GW Hu, QF Wang, K Liao - Genetica, 2018 - Springer
The plant chloroplast (cp) genome is a highly conserved structure which is beneficial for
evolution and systematic research. Currently, numerous complete cp genome sequences …

The complete chloroplast genome of Myriophyllum spicatum reveals a 4‐kb inversion and new insights regarding plastome evolution in Haloragaceae

YY Liao, Y Liu, X Liu, TF Lü, RW Mbichi… - Ecology and …, 2020 - Wiley Online Library
Myriophyllum, among the most species‐rich genera of aquatic angiosperms with ca. 68
species, is an extensively distributed hydrophyte lineage in the cosmopolitan family …

Complete chloroplast of four Sanicula taxa (Apiaceae) endemic to China: lights into genome structure, comparative analysis, and phylogenetic relationships

H Li, M Wu, Q Lai, W Zhou, C Song - BMC Plant Biology, 2023 - Springer
Abstract Background The genus Sanicula comprises ca. 45 taxa, widely distributed from
East Asia to North America, which is a taxonomically difficult genus with high medicinal …