Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone

J Leebens-Mack, LA Raubeson, L Cui… - Molecular Biology …, 2005 - academic.oup.com
While there has been strong support for Amborella and Nymphaeales (water lilies) as
branching from basal-most nodes in the angiosperm phylogeny, this hypothesis has recently …

[HTML][HTML] Species delimitation and interspecific relationships of the genus Orychophragmus (Brassicaceae) inferred from whole chloroplast genomes

H Hu, Q Hu, IA Al-Shehbaz, X Luo, T Zeng… - Frontiers in Plant …, 2016 - frontiersin.org
Genetic variations from few chloroplast DNA fragments show lower discriminatory power in
the delimitation of closely related species and less resolution ability in discerning …

Twelve newly assembled jasmine chloroplast genomes: unveiling genomic diversity, phylogenetic relationships and evolutionary patterns among Oleaceae and …

X Xu, H Huang, S Lin, L Zhou, Y Yi, E Lin, L Feng… - BMC Plant …, 2024 - Springer
Jasmine (Jasminum), renowned for its ornamental value and captivating fragrance, has
given rise to numerous species and accessions. However, limited knowledge exists …

Comparative analysis of chloroplast genomes in Vasconcellea pubescens A.DC. and Carica papaya L.

Z Lin, P Zhou, X Ma, Y Deng, Z Liao, R Li, R Ming - Scientific reports, 2020 - nature.com
The chloroplast genome is an integral part of plant genomes in a species along with nuclear
and mitochondrial genomes, contributing to adaptation, diversification, and evolution of plant …

Chloroplast genome evolution in four montane Zingiberaceae taxa in China

Q Yang, GF Fu, ZQ Wu, L Li, JL Zhao… - Frontiers in Plant Science, 2022 - frontiersin.org
Chloroplasts are critical to plant survival and adaptive evolution. The comparison of
chloroplast genomes could provide insight into the adaptive evolution of closely related …

Plastome evolution in the Caesalpinia group (Leguminosae) and its application in phylogenomics and populations genetics

P Aecyo, A Marques, B Huettel, A Silva, T Esposito… - Planta, 2021 - Springer
Main conclusion The chloroplast genomes of Caesalpinia group species are structurally
conserved, but sequence level variation is useful for both phylogenomic and population …

Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

W Wang, M Schalamun, A Morales-Suarez, D Kainer… - BMC genomics, 2018 - Springer
Background Chloroplasts are organelles that conduct photosynthesis in plant and algal
cells. The information chloroplast genome contained is widely used in agriculture and …

Comparative Analysis of Complete Chloroplast Genomes of 13 Species in Epilobium, Circaea, and Chamaenerion and Insights Into Phylogenetic Relationships of …

Y Luo, J He, R Lyu, J Xiao, W Li, M Yao, L Pei… - Frontiers in …, 2021 - frontiersin.org
The evening primrose family, Onagraceae, is a well defined family of the order Myrtales,
comprising 22 genera widely distributed from boreal to tropical areas. In this study, we report …

Unlocking the Complete Chloroplast Genome of a Native Tree Species from the Amazon Basin, Capirona (Calycophyllum Spruceanum, Rubiaceae), and Its …

CL Saldaña, P Rodriguez-Grados, JC Chávez-Galarza… - Genes, 2022 - mdpi.com
Capirona (Calycophyllum spruceanum Benth.) belongs to subfamily Ixoroideae, one of the
major lineages in the Rubiaceae family, and is an important timber tree. It originated in the …

Cytogenomic analyses reveal the structural plasticity of the chloroplast genome in higher plants

JW Lilly, MJ Havey, SA Jackson, J Jiang - The Plant Cell, 2001 - academic.oup.com
A DNA fiber-based fluorescence in situ hybridization (fiber-FISH) technique was developed
to analyze the structure and organization of a large number of intact chloroplast DNA …