[HTML][HTML] funRNA: a fungi-centered genomics platform for genes encoding key components of RNAi

J Choi, KT Kim, J Jeon, J Wu, H Song, FO Asiegbu… - BMC genomics, 2014 - Springer
Background RNA interference (RNAi) is involved in genome defense as well as diverse
cellular, developmental, and physiological processes. Key components of RNAi are …

[HTML][HTML] Intragenomic variation in nuclear ribosomal markers and its implication in species delimitation, identification and barcoding in fungi

S Paloi, JJ Luangsa-Ard, W Mhuantong, M Stadler… - Fungal Biology …, 2022 - Elsevier
Intragenomic variation is the molecular variation within the genome among repetitive DNA.
As a multigene family, nuclear ribosomal DNA (rDNA) has been widely used in fungal …

[HTML][HTML] Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus

K Lin, E Limpens, Z Zhang, S Ivanov… - PLoS …, 2014 - journals.plos.org
Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to
their asexual nature and absence of a single cell stage with only one nucleus. This has …

Comprehensive investigation of long non-coding RNAs in an endophytic fungus Calcarisporium arbuscula NRRL 3705

CF Sun, Y Guo, A Kataria, S Annamalai, K Malik… - Archives of …, 2023 - Springer
Long non-coding RNAs (lncRNAs) play an important role in eukaryotic cells. However, there
is no report of lncRNAs in endophytic fungi Calcarisporium arbuscula. Here, in …

[HTML][HTML] In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies

M Montoliu-Nerin, M Sánchez-García… - Frontiers in fungal …, 2021 - frontiersin.org
Morphological characters and nuclear ribosomal DNA (rDNA) phylogenies have so far been
the basis of the current classifications of arbuscular mycorrhizal (AM) fungi. Improved …

PacBio sequencing of Glomeromycota rDNA: a novel amplicon covering all widely used ribosomal barcoding regions and its applicability in taxonomy and ecology of …

Z Kolaříková, R Slavíková, C Krüger, M Krüger… - New …, 2021 - Wiley Online Library
There is no consensus barcoding region for determination of arbuscular mycorrhizal fungal
(AMF) taxa. To overcome this obstacle, we have developed an approach to sequence an …

Methods to estimate the proportion of plant and fungal RNA in an arbuscular mycorrhiza

IE Maldonado-Mendoza, GR Dewbre, ML Van Buuren… - Mycorrhiza, 2002 - Springer
Arbuscular mycorrhizas are endosymbiotic associations formed between obligately
biotrophic arbuscular mycorrhizal (AM) fungi and plant roots. The fungus and plant coexist in …

[HTML][HTML] Widespread polycistronic transcripts in fungi revealed by single-molecule mRNA sequencing

SP Gordon, E Tseng, A Salamov, J Zhang, X Meng… - PloS one, 2015 - journals.plos.org
Genes in prokaryotic genomes are often arranged into clusters and co-transcribed into
polycistronic RNAs. Isolated examples of polycistronic RNAs were also reported in some …

[HTML][HTML] Genome-wide profiling of long non-coding RNA of the rice blast fungus Magnaporthe oryzae during infection

G Choi, J Jeon, H Lee, S Zhou, YH Lee - BMC genomics, 2022 - Springer
Abstract Background Long non-coding RNAs (lncRNAs) play essential roles in
developmental processes and disease development at the transcriptional and post …

Genome-wide analysis of small RNAs in the rice blast fungus, Magnaporthe oryzae

이현준 - 2023 - s-space.snu.ac.kr
RNA interference (RNAi) is a conserved mechanism suppressing gene expression mediated
by small RNA (sRNA). sRNA guides RNA-induced silencing complex (RISC) to target mRNA …