Lost in translation: population genomics and long-read sequencing reveals relaxation of concerted evolution of the ribosomal DNA cistron

K Tremble, LM Suz, BTM Dentinger - Molecular phylogenetics and evolution, 2020 - Elsevier
Concerted evolution of the ribosomal DNA array has been studied in numerous eukaryotic
taxa, yet is still poorly understood. rDNA genes are repeated dozens to hundreds of times in …

Genome diversity in arbuscular mycorrhizal fungi

JPW Young - Current Opinion in Plant Biology, 2015 - Elsevier
Highlights•In arbuscular mycorrhizal fungi, multiple nuclei share a common
cytoplasm.•There can be genomic diversity among the nuclei in an isolate.•Changes in …

Purifying Selection and Persistent Polymorphism among Nuclei in the Multinucleate Arbuscular Mycorrhizal (AM) Fungi

D Manyara, M Sánchez-García, MH Thorén… - bioRxiv, 2023 - biorxiv.org
Arbuscular mycorrhizal (AM) fungi form obligate symbiosis with the roots of the majority of
land plants and are found in all terrestrial ecosystems. The source and structure of genetic …

A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R

X Fuli, Z Wenlong, W Xiao, Z Jing, H Baohai… - Frontiers in …, 2017 - frontiersin.org
In bacteria, small non-coding RNAs (sRNAs) are critical regulators of cellular adaptation to
changes in metabolism, physiology, or the external environment. In the last decade, more …

Evolution of a large ribosomal RNA multigene family in filamentous fungi: birth and death of a concerted evolution paradigm

AP Rooney, TJ Ward - … of the National Academy of Sciences, 2005 - National Acad Sciences
In eukaryotes, the primary components of the ribosome are encoded by multicopy nuclear
ribosomal RNA (rRNA) genes: 28/26S, 18S, 5.8 S, and 5S. Copies of these genes are …

[HTML][HTML] Plant‐driven genome selection of arbuscular mycorrhizal fungi

E Limpens, R Geurts - Molecular Plant Pathology, 2014 - ncbi.nlm.nih.gov
Arbuscular mycorrhizal (AM) fungi belong to the order Glomeromycota and arguably form
the most successful symbiosis in plants. This is a very ancient symbiosis which originated …

Stochastic nuclear organization and host-dependent allele contribution in Rhizophagus irregularis

J Van Creij, B Auxier, J An, RY Wijfjes, C Bergin… - BMC genomics, 2023 - Springer
Background Arbuscular mycorrhizal (AM) fungi are arguably the most important symbionts of
plants, offering a range of benefits to their hosts. However, the provisioning of these benefits …

Unlinked rRNA genes are widespread among bacteria and archaea

TE Brewer, M Albertsen, A Edwards… - The ISME …, 2020 - academic.oup.com
Ribosomes are essential to cellular life and the genes for their RNA components are the
most conserved and transcribed genes in bacteria and archaea. Ribosomal RNA genes are …

Discovery of interaction-related sRNAs and their targets in the Brachypodium distachyon and Magnaporthe oryzae pathosystem

S Zanini, E Šečić, T Busche, J Kalinowski, KH Kogel - BioRxiv, 2019 - biorxiv.org
Microbial pathogens secrete small RNA (sRNA) effectors into plant hosts to aid infection by
silencing transcripts of immunity and signaling-related genes through RNA interference …

Genome-wide analysis of small RNAs in the wheat pathogenic fungus Zymoseptoria tritici

F Yang - Fungal biology, 2015 - Elsevier
Small non-coding RNAs constitute a large family of regulatory molecules with diverse
function. Knowledge about small RNAs in fungi remains limited. Here, a RNA-seq-based …