The genome and microbiome of a dikaryotic fungus (Inocybe terrigena, Inocybaceae) revealed by metagenomics

M Bahram, D Vanderpool, M Pent… - Environmental …, 2018 - Wiley Online Library
Recent advances in molecular methods have increased our understanding of various fungal
symbioses. However, little is known about genomic and microbiome features of most …

[PDF][PDF] Genome-level analyses resolve an ancient lineage of symbiotic ascomycetes

D Díaz-Escandón, G Tagirdzhanova, D Vanderpool… - Current Biology, 2022 - cell.com
Ascomycota account for about two-thirds of named fungal species. 1 Over 98% of known
Ascomycota belong to the Pezizomycotina, including many economically important species …

Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in the Ascomycota

R Hill, Q Levicky, F Pitsillides… - Genome Biology and …, 2023 - academic.oup.com
The Ascomycota form the largest phylum in the fungal kingdom and show a wide diversity of
lifestyles, some involving associations with plants. Genomic data are available for many …

Endophytic Life Strategies Decoded by Genome and Transcriptome Analyses of the Mutualistic Root Symbiont Piriformospora indica

A Zuccaro, U Lahrmann, U Güldener, G Langen… - PLoS …, 2011 - journals.plos.org
Recent sequencing projects have provided deep insight into fungal lifestyle-associated
genomic adaptations. Here we report on the 25 Mb genome of the mutualistic root symbiont …

[PDF][PDF] Predicted input of uncultured fungal symbionts to a lichen symbiosis from metagenome-assembled genomes

G Tagirdzhanova, P Saary, JP Tingley… - Genome Biology and …, 2021 - academic.oup.com
Basidiomycete yeasts have recently been reported as stably associated secondary fungal
symbionts of many lichens, but their role in the symbiosis remains unknown. Attempts to …

Metagenome sequence of E laphomyces granulatus from sporocarp tissue reveals A scomycota ectomycorrhizal fingerprints of genome expansion and a P …

CA Quandt, A Kohler, CN Hesse… - Environmental …, 2015 - Wiley Online Library
Many obligate symbiotic fungi are difficult to maintain in culture, and there is a growing need
for alternative approaches to obtaining tissue and subsequent genomic assemblies from …

Fungal genomics

A Tsang - Briefings in functional genomics, 2014 - academic.oup.com
From inconspicuous microorganisms to moulds to mushrooms, the biodiversity of
filamentous fungi is enormous. They are the major decomposers of plant-derived biomass …

Genome-scale data resolve ancestral rock-inhabiting lifestyle in Dothideomycetes (Ascomycota)

CG Ametrano, F Grewe, PW Crous, SB Goodwin… - IMA fungus, 2019 - Springer
Dothideomycetes is the most diverse fungal class in Ascomycota and includes species with
a wide range of lifestyles. Previous multilocus studies have investigated the taxonomic and …

At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions

F Venice, S Ghignone… - Environmental …, 2020 - Wiley Online Library
As members of the plant microbiota, arbuscular mycorrhizal fungi (AMF, Glomeromycotina)
symbiotically colonize plant roots. AMF also possess their own microbiota, hosting some …

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

M Peter, A Kohler, RA Ohm, A Kuo, J Krützmann… - Nature …, 2016 - nature.com
The most frequently encountered symbiont on tree roots is the ascomycete Cenococcum
geophilum, the only mycorrhizal species within the largest fungal class Dothideomycetes, a …