Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap (Lactarius) mushrooms

A Lebreton, N Tang, A Kuo, K LaButti… - New …, 2022 - Wiley Online Library
Ectomycorrhizal fungi play a key role in forests by establishing mutualistic symbioses with
woody plants. Genome analyses have identified conserved symbiosis‐related traits among …

The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution

S Traeger, F Altegoer, M Freitag, T Gabaldon… - PLoS …, 2013 - journals.plos.org
Fungi are a large group of eukaryotes found in nearly all ecosystems. More than 250 fungal
genomes have already been sequenced, greatly improving our understanding of fungal …

1 Fungi from PCR to Genomics: The Spreading Revolution in Evolutionary Biology

JW Taylor, ML Berbee - Systematics and Evolution: Part A, 2014 - Springer
We are in the golden age of fungal evolutionary biology. In this introductory chapter, we
celebrate the progress in unraveling fungal relationships that paralleled the spread of the …

Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota

Y Chang, A Desirò, H Na, L Sandor, A Lipzen… - New …, 2019 - Wiley Online Library
Summary Endogonales (Mucoromycotina), composed of Endogonaceae and
Densosporaceae, is the only known non‐Dikarya order with ectomycorrhizal members. They …

Leaf and root endospheres harbor lower fungal diversity and less complex fungal co-occurrence patterns than rhizosphere

X Qian, H Li, Y Wang, B Wu, M Wu, L Chen… - Frontiers in …, 2019 - frontiersin.org
Plant-associated microbiomes are key determinants of host-plant fitness, productivity, and
function. However, compared to bacterial community, we still lack fundamental knowledge …

Single nucleus genome sequencing reveals high similarity among nuclei of an endomycorrhizal fungus

K Lin, E Limpens, Z Zhang, S Ivanov… - PLoS …, 2014 - journals.plos.org
Nuclei of arbuscular endomycorrhizal fungi have been described as highly diverse due to
their asexual nature and absence of a single cell stage with only one nucleus. This has …

Functional genomics, transcriptomics, and proteomics reveal distinct combat strategies between lineages of wood-degrading fungi with redundant wood decay …

GN Presley, J Zhang, SO Purvine… - Frontiers in …, 2020 - frontiersin.org
Wood-degrading fungi vary in their strategies for deconstructing wood, and their competitive
successes shape the rate and fate of carbon released from wood, Earth's largest pool of …

Fungal genomics: sequencing and annotation

A Kuo, B Bushnell, IV Grigoriev - Advances in botanical research, 2014 - Elsevier
Plants grow in close associations with fungi—pathogens, symbionts, and endophytes—and
depend on these associations for success. Therefore, understanding the mechanisms of …

Endophyte genomes support greater metabolic gene cluster diversity compared with non-endophytes in Trichoderma

K Scott, Z Konkel, E Gluck-Thaler, GE Valero David… - PloS one, 2023 - journals.plos.org
Trichoderma is a cosmopolitan genus with diverse lifestyles and nutritional modes, including
mycotrophy, saprophytism, and endophytism. Previous research has reported greater …

Globally distributed root endophyte Phialocephala subalpina links pathogenic and saprophytic lifestyles

M Schlegel, M Münsterkötter, U Güldener… - BMC genomics, 2016 - Springer
Background Whereas an increasing number of pathogenic and mutualistic ascomycetous
species were sequenced in the past decade, species showing a seemingly neutral …