Subgenome assignment in allopolyploids: challenges and future directions

PP Edger, MR McKain, KA Bird, R VanBuren - Current opinion in plant …, 2018 - Elsevier
Highlights•Many recent and ancient allopolyploids exhibit subgenome
dominance.•Extensive homoeologous exchanges complicate accurate subgenome …

Next‐generation sequencing and genome evolution in allopolyploids

RJA Buggs, S Renny‐Byfield, M Chester… - American Journal of …, 2012 - Wiley Online Library
• Premise of the study: Hybridization and polyploidization (allopolyploidy) are ubiquitous in
the evolution of plants, but tracing the origins and subsequent evolution of the constituent …

[图书][B] Significance and biological consequences of polyploidization in land plant evolution

JA Fawcett, Y Van de Peer, S Maere - 2013 - Springer
Although plant polyploidization is ubiquitous in nature, polyploidy has long been considered
an evolutionary dead end, precluding further species diversification. However, recent …

Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy

KA Steige, T Slotte - Current opinion in plant biology, 2016 - Elsevier
Highlights•Genomic legacies of the ancestors may affect duplicate gene evolution in
allopolyploids.•Duplicate gene loss in allopolyploids is often distinctly non …

Polyploidy index and its implications for the evolution of polyploids

J Wang, J Qin, P Sun, X Ma, J Yu, Y Li, S Sun… - Frontiers in …, 2019 - frontiersin.org
Polyploidy has contributed to the divergence and domestication of plants; however,
estimation of the relative roles that different types of polyploidy have played during evolution …

The role of hybridization in plant speciation

PS Soltis, DE Soltis - Annual review of plant biology, 2009 - annualreviews.org
The importance of hybridization in plant speciation and evolution has been debated for
decades, with opposing views of hybridization as either a creative evolutionary force or …

Epigenetic phenomena and the evolution of plant allopolyploids

B Liu, JF Wendel - Molecular phylogenetics and evolution, 2003 - Elsevier
Allopolyploid speciation is widespread in plants, yet the molecular requirements for
successful orchestration of coordinated gene expression for two divergent and reunited …

One subgenome to rule them all: underlying mechanisms of subgenome dominance

EI Alger, PP Edger - Current opinion in plant biology, 2020 - Elsevier
Highlights• A single subgenome in allopolyploids may contribute to the majority of the
phenotype.• Methylation of transposons near genes is associated with subgenome …

Subgenome evolution in allotetraploid plants

M Schiavinato, A Bodrug‐Schepers, JC Dohm… - The Plant …, 2021 - Wiley Online Library
Polyploidization is a well‐known speciation and adaptation mechanism. Traces of former
polyploidization events were discovered within many genomes, and especially in plants …

Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …