A comparative binding study of modified bovine immunodeficiency virus TAR RNA against its TAT peptide

JBH Tok, L Bi, S Huang - Bioorganic & medicinal chemistry letters, 2004 - Elsevier
Besides generating novel binding peptides or small molecules to their RNA target,
successful design of chemically modified RNA constructs capable of tighter binding with …

Detailed mutational analysis of TAR RNA: critical spacing between the bulge and loop recognition domains

B Berkhout, KT Jeang - Nucleic acids research, 1991 - academic.oup.com
Trans-activation of HIV-1 by the Tat protein is mediated through a cis-acting element (TAR)
in the viral RNA. In order to obtain further insight into the molecular interactions for trans …

Polyamide Amino Acids trimers as TAR RNA ligands and anti-HIV agents

V Bonnard, L Pascale, S Azoulay, A Di Giorgio… - Bioorganic & medicinal …, 2010 - Elsevier
Based on a split-and-mix strategy, a library of trimeric Polyamide Amino Acids (PAA)
incorporating four different amino acids (Lys, Ala, Arg, and Phe) has been prepared …

TAR-RNA recognition by a novel cyclic aminoglycoside analogue

D Raghunathan, VM Sánchez-Pedregal… - Nucleic acids …, 2006 - academic.oup.com
The formation of the Tat-protein/TAR-RNA complex is a crucial step in the regulation of
human immunodeficiency virus (HIV)-gene expression. To obtain full-length viral transcripts …

A single intermolecular contact mediates intramolecular stabilization of both RNA and protein

V Calabro, MD Daugherty… - Proceedings of the …, 2005 - National Acad Sciences
An arginine-rich peptide from the Jembrana disease virus (JDV) Tat protein is a structural
“chameleon” that binds bovine immunodeficiency virus (BIV) or HIV TAR RNAs in two …

Aminoglycoside− arginine conjugates that bind TAR RNA: synthesis, characterization, and antiviral activity

A Litovchick, AG Evdokimov, A Lapidot - Biochemistry, 2000 - ACS Publications
Regulation of HIV gene expression is crucially dependent on binding of the trans-activator
protein, Tat, to the trans-activation response RNA element, TAR, found at the 5 'end of all …

Fragment based search for small molecule inhibitors of HIV-1 Tat-TAR

M Zeiger, S Stark, E Kalden, B Ackermann… - Bioorganic & Medicinal …, 2014 - Elsevier
Basic molecular building blocks such as benzene rings, amidines, guanidines, and amino
groups have been combined in a systematic way to generate ligand candidates for HIV-1 …

Identification of a novel HIV-1 TAR RNA bulge binding protein

B Baker, M Muckenthaler, E Vives… - Nucleic acids …, 1994 - academic.oup.com
The Tat protein binds to TAR RNA to stimulate the expression of the human
immunodeficiency virus type 1 (HIV-1) genome. Tat is an 86 amino acid protein that contains …

How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape

MF Bardaro Jr, Z Shajani… - Nucleic acids …, 2009 - academic.oup.com
Abstract The HIV-1 TAR RNA represents a well-known paradigm to study the role of
dynamics and conformational change in RNA function. This regulatory RNA changes …

Click dimers to target HIV TAR RNA conformation

S Kumar, P Kellish, WE Robinson Jr, D Wang… - Biochemistry, 2012 - ACS Publications
A series of neomycin dimers have been synthesized using “click chemistry” with varying
functionality and length in the linker region to target the human immunodeficiency virus type …