[图书][B] Exploring fungal disease associations using genomic data and network models
IR Medina - 2022 - pure.manchester.ac.uk
Convergent evolution is a process by which different distantly related species can evolve the
same trait, usually involving adaptation to similar environments, and it is a widespread …
same trait, usually involving adaptation to similar environments, and it is a widespread …
Large-scale analysis of plasmid relationships through gene-sharing networks
Plasmids are vessels of genetic exchange in microbial communities. They are known to
transfer between different host organisms and acquire diverse genetic elements from …
transfer between different host organisms and acquire diverse genetic elements from …
MultiTwin: A Software Suite to Analyze Evolution at Multiple Levels of Organization Using Multipartite Graphs
The inclusion of introgressive processes in evolutionary studies induces a less constrained
view of evolution. Network-based methods (like large-scale similarity networks) allow to …
view of evolution. Network-based methods (like large-scale similarity networks) allow to …
Efficient learning of microbial genotype–phenotype association rules
NJ MacDonald, RG Beiko - Bioinformatics, 2010 - academic.oup.com
Motivation: Finding biologically causative genotype–phenotype associations from whole-
genome data is difficult due to the large gene feature space to mine, the potential for …
genome data is difficult due to the large gene feature space to mine, the potential for …
Revealing the molecular signatures of host-pathogen interactions
CC Khor, ML Hibberd - Genome biology, 2011 - Springer
Revealing the molecular signatures of host-pathogen interactions | Genome Biology Skip to
main content SpringerLink Account Menu Find a journal Publish with us Track your research …
main content SpringerLink Account Menu Find a journal Publish with us Track your research …
Microbiology goes big: microbial systems biology
G Teitzel - Trends in microbiology, 2011 - cell.com
At the conferences I have recently attended, it is remarkable to me that more and more of the
research presented is based upon large data sets with the ability to address very broad …
research presented is based upon large data sets with the ability to address very broad …
[HTML][HTML] Fungome: Annotating proteins implicated in fungal pathogenesis
R Gudimella, S Nallapeta, P Varadwaj… - Bioinformation, 2010 - ncbi.nlm.nih.gov
Sequencing genomes of different pathogenic fungi produced plethora of genetic information.
This “omics” data might be of great interest to probe strain diversity, identify virulence factors …
This “omics” data might be of great interest to probe strain diversity, identify virulence factors …
Using biotic interaction networks for prediction in biodiversity and emerging diseases
CR Stephens, JG Heau, C González… - PLoS …, 2009 - journals.plos.org
Networks offer a powerful tool for understanding and visualizing inter-species ecological
and evolutionary interactions. Previously considered examples, such as trophic networks …
and evolutionary interactions. Previously considered examples, such as trophic networks …
Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development
Fungal model species have contributed to many aspects of modern biology, from
biochemistry and cell biology to molecular genetics. Nevertheless, only a few genes …
biochemistry and cell biology to molecular genetics. Nevertheless, only a few genes …
Gene expression of functionally-related genes coevolves across fungal species: detecting coevolution of gene expression using phylogenetic comparative methods
Background Researchers often measure changes in gene expression across conditions to
better understand the shared functional roles and regulatory mechanisms of different genes …
better understand the shared functional roles and regulatory mechanisms of different genes …