[图书][B] Exploring fungal disease associations using genomic data and network models

IR Medina - 2022 - pure.manchester.ac.uk
Convergent evolution is a process by which different distantly related species can evolve the
same trait, usually involving adaptation to similar environments, and it is a widespread …

Large-scale analysis of plasmid relationships through gene-sharing networks

M Tamminen, M Virta, R Fani… - Molecular Biology and …, 2012 - academic.oup.com
Plasmids are vessels of genetic exchange in microbial communities. They are known to
transfer between different host organisms and acquire diverse genetic elements from …

MultiTwin: A Software Suite to Analyze Evolution at Multiple Levels of Organization Using Multipartite Graphs

E Corel, JS Pathmanathan, AK Watson… - Genome Biology and …, 2018 - academic.oup.com
The inclusion of introgressive processes in evolutionary studies induces a less constrained
view of evolution. Network-based methods (like large-scale similarity networks) allow to …

Efficient learning of microbial genotype–phenotype association rules

NJ MacDonald, RG Beiko - Bioinformatics, 2010 - academic.oup.com
Motivation: Finding biologically causative genotype–phenotype associations from whole-
genome data is difficult due to the large gene feature space to mine, the potential for …

Revealing the molecular signatures of host-pathogen interactions

CC Khor, ML Hibberd - Genome biology, 2011 - Springer
Revealing the molecular signatures of host-pathogen interactions | Genome Biology Skip to
main content SpringerLink Account Menu Find a journal Publish with us Track your research …

Microbiology goes big: microbial systems biology

G Teitzel - Trends in microbiology, 2011 - cell.com
At the conferences I have recently attended, it is remarkable to me that more and more of the
research presented is based upon large data sets with the ability to address very broad …

[HTML][HTML] Fungome: Annotating proteins implicated in fungal pathogenesis

R Gudimella, S Nallapeta, P Varadwaj… - Bioinformation, 2010 - ncbi.nlm.nih.gov
Sequencing genomes of different pathogenic fungi produced plethora of genetic information.
This “omics” data might be of great interest to probe strain diversity, identify virulence factors …

Using biotic interaction networks for prediction in biodiversity and emerging diseases

CR Stephens, JG Heau, C González… - PLoS …, 2009 - journals.plos.org
Networks offer a powerful tool for understanding and visualizing inter-species ecological
and evolutionary interactions. Previously considered examples, such as trophic networks …

Using evolutionary genomics, transcriptomics, and systems biology to reveal gene networks underlying fungal development

Z Wang, A Gudibanda, U Ugwuowo, F Trail… - Fungal biology …, 2018 - Elsevier
Fungal model species have contributed to many aspects of modern biology, from
biochemistry and cell biology to molecular genetics. Nevertheless, only a few genes …

Gene expression of functionally-related genes coevolves across fungal species: detecting coevolution of gene expression using phylogenetic comparative methods

AL Cope, BC O'Meara, MA Gilchrist - BMC genomics, 2020 - Springer
Background Researchers often measure changes in gene expression across conditions to
better understand the shared functional roles and regulatory mechanisms of different genes …