Diverse modes of H3K36me3-guided nucleosomal deacetylation by Rpd3S

H Guan, P Wang, P Zhang, C Ruan, Y Ou, B Peng… - Nature, 2023 - nature.com
Context-dependent dynamic histone modifications constitute a key epigenetic mechanism in
gene regulation,,–. The Rpd3 small (Rpd3S) complex recognizes histone H3 trimethylation …

Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes

S Venkatesh, M Smolle, H Li, MM Gogol, M Saint… - Nature, 2012 - nature.com
Set2-mediated methylation of histone H3 at Lys 36 (H3K36me) is a co-transcriptional event
that is necessary for the activation of the Rpd3S histone deacetylase complex, thereby …

Multivalent di‐nucleosome recognition enables the Rpd3S histone deacetylase complex to tolerate decreased H3K36 methylation levels

JW Huh, J Wu, CH Lee, M Yun, D Gilada… - The EMBO …, 2012 - embopress.org
The Rpd3S histone deacetylase complex represses cryptic transcription initiation within
coding regions by maintaining the hypo‐acetylated state of transcribed chromatin. Rpd3S …

Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin

B Li, M Gogol, M Carey, D Lee, C Seidel, JL Workman - Science, 2007 - science.org
Nucleosomes must be deacetylated behind elongating RNA polymerase II to prevent cryptic
initiation of transcription within the coding region. RNA polymerase II signals for …

Structural basis of nucleosome deacetylation and DNA linker tightening by Rpd3S histone deacetylase complex

S Dong, H Li, M Wang, N Rasheed, B Zou, X Gao… - Cell Research, 2023 - nature.com
In Saccharomyces cerevisiae, cryptic transcription at the coding region is prevented by the
activity of Sin3 histone deacetylase (HDAC) complex Rpd3S, which is carried by the …

Nucleosome contact triggers conformational changes of Rpd3S driving high-affinity H3K36me nucleosome engagement

C Ruan, CH Lee, H Cui, S Li, B Li - Cell reports, 2015 - cell.com
The Rpd3S histone deacetylase complex utilizes two subunits, Eaf3 and Rco1, to recognize
nucleosomes methylated at H3K36 (H3K36me) with high affinity and strong specificity …

[HTML][HTML] Structural basis for the recognition of methylated histone H3K36 by the Eaf3 subunit of histone deacetylase complex Rpd3S

C Xu, G Cui, MV Botuyan, G Mer - Structure, 2008 - cell.com
Deacetylation of nucleosomes by the Rpd3S histone deacetylase along the path of
transcribing RNA polymerase II regulates access to DNA, contributing to faithful gene …

[PDF][PDF] Chromatin remodelers fine-tune H3K36me-directed deacetylation of neighbor nucleosomes by Rpd3S

CH Lee, J Wu, B Li - Molecular cell, 2013 - cell.com
Chromatin remodelers have been implicated in the regulation of histone-modifying
complexes. However, the underlying mechanism remains poorly understood. The Rpd3S …

Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription

B Li, J Jackson, MD Simon, B Fleharty, M Gogol… - Journal of Biological …, 2009 - ASBMB
Histone methylation is associated with both transcription activation and repression.
However, the functions of different states of methylation remain largely elusive. Here, using …

Genome-wide binding map of the histone deacetylase Rpd3 in yeast

SK Kurdistani, D Robyr, S Tavazoie, M Grunstein - Nature genetics, 2002 - nature.com
We describe the genome-wide distribution of the histone deacetylase and repressor Rpd3
and its associated proteins Ume1 and Ume6 in Saccharomyces cerevisiae. Using a new …