[HTML][HTML] A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

JE McCormack, MG Harvey, BC Faircloth… - PloS one, 2013 - journals.plos.org
Evolutionary relationships among birds in Neoaves, the clade comprising the vast majority of
avian diversity, have vexed systematists due to the ancient, rapid radiation of numerous …

A phylogenomic study of birds reveals their evolutionary history

SJ Hackett, RT Kimball, S Reddy, RCK Bowie… - science, 2008 - science.org
Deep avian evolutionary relationships have been difficult to resolve as a result of a putative
explosive radiation. Our study examined∼ 32 kilobases of aligned nuclear DNA sequences …

What have we learned from the first 500 avian genomes?

GA Bravo, CJ Schmitt… - Annual Review of Ecology …, 2021 - annualreviews.org
The increased capacity of DNA sequencing has significantly advanced our understanding of
the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic …

[HTML][HTML] How many kinds of birds are there and why does it matter?

GF Barrowclough, J Cracraft, J Klicka, RM Zink - PLoS One, 2016 - journals.plos.org
Estimates of global species diversity have varied widely, primarily based on variation in the
numbers derived from different inventory methods of arthropods and other small …

Phylogenomic analyses data of the avian phylogenomics project

ED Jarvis, S Mirarab, AJ Aberer, B Li, P Houde… - …, 2015 - academic.oup.com
Background Determining the evolutionary relationships among the major lineages of extant
birds has been one of the biggest challenges in systematic biology. To address this …

Resolving the avian tree of life from top to bottom: the promise and potential boundaries of the phylogenomic era

EL Braun, J Cracraft, P Houde - Avian genomics in ecology and evolution …, 2019 - Springer
Reconstructing relationships among extant birds (Neornithes) has been one of the most
difficult problems in phylogenetics, and, despite intensive effort, the avian tree of life remains …

Genomic approaches to understanding population divergence and speciation in birds

DPL Toews, L Campagna, SA Taylor… - The Auk …, 2016 - academic.oup.com
The widespread application of high-throughput sequencing in studying evolutionary
processes and patterns of diversification has led to many important discoveries. However …

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

BC Faircloth, JE McCormack, NG Crawford… - Systematic …, 2012 - academic.oup.com
Although massively parallel sequencing has facilitated large-scale DNA sequencing,
comparisons among distantly related species rely upon small portions of the genome that …

A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

RO Prum, JS Berv, A Dornburg, DJ Field, JP Townsend… - Nature, 2015 - nature.com
Although reconstruction of the phylogeny of living birds has progressed tremendously in the
last decade, the evolutionary history of Neoaves—a clade that encompasses nearly all living …

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

JE McCormack, JM Maley, SM Hird… - Molecular phylogenetics …, 2012 - Elsevier
Next generation sequencing (NGS) technologies are revolutionizing many biological
disciplines but have been slow to take root in phylogeography. This is partly due to the …