[HTML][HTML] Overview of virus metagenomic classification methods and their biological applications

S Nooij, D Schmitz, H Vennema, A Kroneman… - Frontiers in …, 2018 - frontiersin.org
Metagenomics poses opportunities for clinical and public health virology applications by
offering a way to assess complete taxonomic composition of a clinical sample in an …

Metagenomics in pooled plasma, with identification of potential emerging infectious pathogens

M Xu, Y Yang, Y Zhou, Z Liu, Y Liu, M He - Transfusion, 2018 - Wiley Online Library
BACKGROUND Many emerging infectious pathogens are well known for existing in healthy
blood donors and could be transmitted via blood transfusion or plasma derivatives usage …

Genomic screening for blood‐borne viruses in transfusion settings

JP Allain - Clinical & Laboratory Haematology, 2000 - Wiley Online Library
The residual risk of post‐transfusion human immunodeficiency virus (HIV) infection is low
but slightly higher for hepatitis B virus (HBV) and hepatitis C virus (HCV), the main reason …

[HTML][HTML] Unraveling the viral dark matter through viral metagenomics

TM Santiago-Rodriguez, EB Hollister - Frontiers in immunology, 2022 - frontiersin.org
Viruses are part of the microbiome and have essential roles in immunology, evolution,
biogeochemical cycles, health, and disease progression. Viruses influence a wide variety of …

[HTML][HTML] Virome genomics: a tool for defining the human virome

KM Wylie, GM Weinstock, GA Storch - Current opinion in microbiology, 2013 - Elsevier
Highlights•High-throughput sequencing can be used to study virus–host interactions.•
Sequencing can be used for virus discovery and detection of emerging pathogens.• …

Transfusion-transmitted infectious diseases

JP Allain, SL Stramer, ABF Carneiro-Proietti… - Biologicals, 2009 - Elsevier
A spectrum of blood-borne infectious agents is transmitted through transfusion of infected
blood donated by apparently healthy and asymptomatic blood donors. The diversity of …

[HTML][HTML] Maximal viral information recovery from sequence data using VirMAP

NJ Ajami, MC Wong, MC Ross, RE Lloyd… - Nature …, 2018 - nature.com
Accurate classification of the human virome is critical to a full understanding of the role
viruses play in health and disease. This implies the need for sensitive, specific, and practical …

[HTML][HTML] Emerging and re-emerging viruses in the era of globalisation

A Zappa, A Amendola, L Romanò, A Zanetti - Blood transfusion, 2009 - ncbi.nlm.nih.gov
During their evolution, human beings, as every other animal and vegetable species, have
had to face innumerable challenges from the world of microorganisms. Indeed, the history of …

Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community

D Schönegger, O Moubset, P Margaria… - Journal of …, 2023 - Am Soc Microbiol
In contrast to microbial metagenomics, there has still been only limited efforts to benchmark
performance of virome analysis approaches in terms of faithfulness to community structure …

Hecatomb: an end-to-end research platform for viral metagenomics

MJ Roach, SJ Beecroft, KA Mihindukulasuriya, L Wang… - bioRxiv, 2022 - biorxiv.org
Background Analysis of viral diversity using modern sequencing technologies offers
extraordinary opportunities for discovery. However, these analyses present a number of …